DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment wdn and Blimp-1

DIOPT Version :9

Sequence 1:NP_476900.1 Gene:wdn / 43398 FlyBaseID:FBgn0005642 Length:869 Species:Drosophila melanogaster
Sequence 2:NP_001261442.1 Gene:Blimp-1 / 38638 FlyBaseID:FBgn0035625 Length:1216 Species:Drosophila melanogaster


Alignment Length:647 Identity:147/647 - (22%)
Similarity:223/647 - (34%) Gaps:181/647 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   104 SSDVCRDDLAATSSSTVPSTLTSDNHSSSEFSVTFLRPEPPNAFTNSPFKKTSSS---------- 158
            :::.||...|||...|.|:.:......|..:. ..:.|:..:....:|.:.:||:          
  Fly   666 AANACRQANAATPPPTSPTEMAYSYKKSQRYG-NAVSPDSSSNLGQNPEQLSSSAVVVGEQEMTR 729

  Fly   159 -----GTSTPVKLSPEQLHQQHQLQMPQSQLL--------------QRKPKLPAATAVRLKVFKE 204
                 |..:|    |...|..|.:....|:..              ...|..|...|.....| .
  Fly   730 ATMIKGECSP----PPPSHHHHNVIFSPSRHAAYLGAGEAGGHSPSPGYPGYPHYGAAATSTF-H 789

  Fly   205 EPPEEKHPPEQVVTKVEVCESELLPPSFTIFQQAKSAESVADAASMPPPAASETKPLEVDPAPLH 269
            .||...|.|                     |.:..:|.|.|.:|:                 .||
  Fly   790 SPPHSSHSP---------------------FDRQSNASSGAGSAT-----------------NLH 816

  Fly   270 KCLDCNGLLLETPDEVAKHEAAAHRLRLTYRCSECQREFELLAGLKKHLKTHRTEGRKDTWKKCP 334
                    ||:|..::..|.       |....:..||...|.......|.   .:|     ..||
  Fly   817 --------LLQTSTQMLNHP-------LMQPLTPLQRLSPLRISPPSSLS---PDG-----NSCP 858

  Fly   335 DCGKCLKLGSMWM--HRKIHSDNKK------YQCDICGQKFVQKINLTHHARIHSSEKPYECPEC 391
            ..|..|...|:..  :|.:....||      |:|::|.:.|.|..||..|.|.||.|:|::|..|
  Fly   859 RSGSPLSPNSLASRGYRSLPYPLKKKDGKMHYECNVCCKTFGQLSNLKVHLRTHSGERPFKCNVC 923

  Fly   392 QKRFQERSHLQRHQKYHAQTRSYRCEKCGKMYKTERCLKVHNLVHLEQRPFACTVCDKSFISNSK 456
            .|.|.:.:|||:|...|...:.::|:.|.|.:.:...||.|..:|..|:|:||.:|.:.|.....
  Fly   924 TKSFTQLAHLQKHHLVHTGEKPHQCDICKKRFSSTSNLKTHLRLHSGQKPYACDLCPQKFTQFVH 988

  Fly   457 LKQHSNIHTGMRPFKCNYCPRDFTNFPNWLKHTRRRHKVDHKTGEHLENIPSYCSKKSTTNKAQK 521
            ||.|..:||..||:.|..|.:.:.:......|.                       |:|:.|...
  Fly   989 LKLHKRLHTNDRPYVCQGCDKKYISASGLRTHW-----------------------KTTSCKPNN 1030

  Fly   522 AAAAAAAAAAASSAVNPNELSASSELKAKANLTSTAAPAPAKQARKKKQPQQATLAALGIT---- 582
            .....|.||||:|.....:.......:|...||....||        ..|....|::.|.:    
  Fly  1031 LEEELAMAAAATSECLDKDHPEPDSREAYEQLTQHMHPA--------VHPGLRHLSSGGQSPPRL 1087

  Fly   583 LPAGTAL---QQVHPVPLAQQHQQE-------------------LTTVLVPLAPPAP--KQTKAK 623
            :|.|..:   ||.|. ...|||||:                   |.|....|.||.|  :|....
  Fly  1088 IPLGNHMAPQQQSHQ-QQQQQHQQQGVPPPHLLMTQHSVGPAPMLLTTASQLPPPPPHHQQNSPS 1151

  Fly   624 R--ERKQLAPKQLQQKPQLLQQGQPQQSSLEPIPAVPQIKKEPVQTQGPFLDLHGLSLTSAE 683
            |  :.....|.|:||     ||.|.||.|.:.:.::|:        .|.:  |||..:.:.|
  Fly  1152 RLLQHGHAHPLQMQQ-----QQQQQQQHSPKGLKSLPE--------SGVY--LHGQHVQAQE 1198

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wdnNP_476900.1 C2H2 Zn finger 301..321 CDD:275368 4/19 (21%)
RPB9 333..425 CDD:224510 33/99 (33%)
C2H2 Zn finger 333..352 CDD:275368 6/20 (30%)
zf-H2C2_2 344..369 CDD:290200 8/32 (25%)
zf-C2H2 358..380 CDD:278523 9/21 (43%)
C2H2 Zn finger 360..380 CDD:275368 8/19 (42%)
zf-H2C2_2 372..395 CDD:290200 11/22 (50%)
zf-C2H2 386..408 CDD:278523 8/21 (38%)
C2H2 Zn finger 388..436 CDD:275368 15/47 (32%)
zf-H2C2_2 400..425 CDD:290200 8/24 (33%)
C2H2 Zn finger 416..433 CDD:275368 5/16 (31%)
zf-H2C2_2 429..453 CDD:290200 10/23 (43%)
C2H2 Zn finger 444..464 CDD:275368 6/19 (32%)
zf-H2C2_2 457..481 CDD:290200 9/23 (39%)
C2H2 Zn finger 472..493 CDD:275368 3/20 (15%)
Blimp-1NP_001261442.1 SET 133..260 CDD:214614
C2H2 Zn finger 892..912 CDD:275368 8/19 (42%)
zf-H2C2_2 904..929 CDD:290200 12/24 (50%)
C2H2 Zn finger 920..940 CDD:275368 8/19 (42%)
zf-H2C2_2 932..957 CDD:290200 8/24 (33%)
C2H2 Zn finger 948..968 CDD:275368 6/19 (32%)
zf-H2C2_2 960..985 CDD:290200 10/24 (42%)
C2H2 Zn finger 976..996 CDD:275368 6/19 (32%)
C2H2 Zn finger 1004..1023 CDD:275368 3/41 (7%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45457156
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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