DRSC/TRiP Functional Genomics Resources

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Protein Alignment wdn and CG12605

DIOPT Version :9

Sequence 1:NP_476900.1 Gene:wdn / 43398 FlyBaseID:FBgn0005642 Length:869 Species:Drosophila melanogaster
Sequence 2:NP_001261387.1 Gene:CG12605 / 38468 FlyBaseID:FBgn0035481 Length:619 Species:Drosophila melanogaster


Alignment Length:454 Identity:120/454 - (26%)
Similarity:176/454 - (38%) Gaps:112/454 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 EGKRMKE-EAPSKKLPPKIYGGDAGTPTKAAHDEILSSLLRINNFDSISSIKDESLDIDLSACVT 70
            |..||:| :..:......||.|.:...|:||||  |.||             .:||...:..||.
  Fly   218 ERDRMREQQLVAATAAASIYRGRSVEETEAAHD--LLSL-------------SQSLPPLIPPCVV 267

  Fly    71 ---------ISSASLVN-GNSLSSTDFWRVLDESAQNNTELNLSSDVCRDDLAATSS----STVP 121
                     :.|..:.. .||.||        .|.|:......||..   ||...||    :..|
  Fly   268 TIMKQEQEQLRSPEIQEISNSASS--------RSPQSTIRFIGSSSY---DLMGGSSEGANNCSP 321

  Fly   122 STLTSDNHSSSEFSVTFLRPEPPNAFTNSPFKKTSSSGTSTPVKLSPEQLHQQHQLQMPQSQLLQ 186
            .|..:.:|||.               .:.....:|.||.....|.:|:|..|:.........:|.
  Fly   322 LTPPNSDHSSD---------------VDIDMSSSSESGLQQWGKPNPQQNQQRASALKMCLNMLD 371

  Fly   187 RKPKLPAATAVRLKVFKEEPPEEKHPPEQVVTKVEVCESELLPPSFTIFQQAKSAESVADAASMP 251
            .:.|...|.||.    |::..|...|                        :.|||:|.|.:...|
  Fly   372 GRTKASKAAAVT----KQDRQEPMQP------------------------RPKSAQSNASSGGGP 408

  Fly   252 PPAASETKPLEVDPAPLHKCLDCNGLLLETPDEVAKHEAAAHRLRLTYRCSECQREFELLAGLKK 316
            |     ::|.|...|.|......||            |..|.|.|..|:|.||.:::...:.|.:
  Fly   409 P-----SEPPENPAASLGHSSSGNG------------ENYAKRKRGCYKCCECGKQYATSSNLSR 456

  Fly   317 HLKTHRTEGRKDTWKKCPDCGKC-LKLGSMWMHRKIHSDNKKYQCDICGQKFVQKINLTHHARIH 380
            |.:|||:...:.. |||..|||. :.:.::.||...|  ...:.|||||:.|.:...|..|.|.|
  Fly   457 HKQTHRSLDSQSA-KKCNTCGKAYVSMPALAMHLLTH--KLSHSCDICGKLFSRPWLLQGHLRSH 518

  Fly   381 SSEKPYECPECQKRFQERSHLQRHQKYHAQTRSYRCEKCGKMYKTERCLKVHNLVHLEQRPFAC 444
            :.||||.|..|.|.|.:||:|:.|.:.|:..::::|.:|.|.:    .||.:...|||.   ||
  Fly   519 TGEKPYACVHCGKAFADRSNLRAHMQTHSGDKNFKCHRCNKTF----ALKSYLNKHLES---AC 575

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wdnNP_476900.1 C2H2 Zn finger 301..321 CDD:275368 5/19 (26%)
RPB9 333..425 CDD:224510 33/92 (36%)
C2H2 Zn finger 333..352 CDD:275368 6/19 (32%)
zf-H2C2_2 344..369 CDD:290200 9/24 (38%)
zf-C2H2 358..380 CDD:278523 9/21 (43%)
C2H2 Zn finger 360..380 CDD:275368 9/19 (47%)
zf-H2C2_2 372..395 CDD:290200 11/22 (50%)
zf-C2H2 386..408 CDD:278523 9/21 (43%)
C2H2 Zn finger 388..436 CDD:275368 14/47 (30%)
zf-H2C2_2 400..425 CDD:290200 6/24 (25%)
C2H2 Zn finger 416..433 CDD:275368 5/16 (31%)
zf-H2C2_2 429..453 CDD:290200 7/16 (44%)
C2H2 Zn finger 444..464 CDD:275368 1/1 (100%)
zf-H2C2_2 457..481 CDD:290200
C2H2 Zn finger 472..493 CDD:275368
CG12605NP_001261387.1 zf-C2H2 439..461 CDD:278523 6/21 (29%)
C2H2 Zn finger 441..461 CDD:275370 5/19 (26%)
C2H2 Zn finger 472..492 CDD:275368 6/19 (32%)
COG5048 492..>570 CDD:227381 29/83 (35%)
zf-C2H2 496..518 CDD:278523 9/21 (43%)
C2H2 Zn finger 498..518 CDD:275368 9/19 (47%)
zf-H2C2_2 511..534 CDD:290200 11/22 (50%)
zf-C2H2 524..546 CDD:278523 9/21 (43%)
C2H2 Zn finger 526..546 CDD:275368 8/19 (42%)
zf-H2C2_2 538..562 CDD:290200 6/27 (22%)
C2H2 Zn finger 554..571 CDD:275368 5/20 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45457083
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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