DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG10000 and Pgant6

DIOPT Version :9

Sequence 1:NP_651630.3 Gene:CG10000 / 43394 FlyBaseID:FBgn0039596 Length:558 Species:Drosophila melanogaster
Sequence 2:NP_001261342.1 Gene:Pgant6 / 38346 FlyBaseID:FBgn0035375 Length:666 Species:Drosophila melanogaster


Alignment Length:522 Identity:172/522 - (32%)
Similarity:255/522 - (48%) Gaps:90/522 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    75 YNIHLSNALGLIRKLPVTRHHSCTTRNSILPAPLEANVSVVISFHNEARSMLLRTIVSLLSRSPE 139
            :|..||:::.:.|.:|..||..|..:..:...|   .|||:|.|:||..|:|:|::.||::|||.
  Fly   170 FNALLSDSISVNRSVPDIRHPLCRKKEYVAKLP---TVSVIIIFYNEYLSVLMRSVHSLINRSPP 231

  Fly   140 DYLHELILVDDGSQRDV------TLLDDLKRWMGGVFGSRYRLGLTFLRNQERMGLIWSRNRGAS 198
            :.:.|:|||||.|.|:.      |.:.:..:|            :..:|...|.|||.:|..||.
  Fly   232 ELMKEIILVDDHSDREYLGKELETYIAEHFKW------------VRVVRLPRRTGLIGARAAGAR 284

  Fly   199 LASGRYVLFLDSHCEVNEGWLEPLLERLALNTNLAVSPLLDPIDPTTLSYRKGNELLKGGFDWSL 263
            .|:...::|||||.|.|..||.||||.:|||...||.|.:|.||.|...||..:|..:|.|||..
  Fly   285 NATAEVLIFLDSHVEANYNWLPPLLEPIALNKRTAVCPFIDVIDHTNFHYRAQDEGARGAFDWEF 349

  Fly   264 HFHWLKRQLTNQESLEM---PYQSPAFAGGVLMMSREWFLKLGSFNPYLKIWGGESIELAIKLWL 325
            .:   ||.....|.|:.   |::||..|||:..:|||:|.:||.::..|.|||||..||:.|:|:
  Fly   350 FY---KRLPLLPEDLKHPADPFKSPIMAGGLFAISREFFWELGGYDEGLDIWGGEQYELSFKIWM 411

  Fly   326 CGGQIEIVPCSRIGHIFR--RRHAFDFPPQSDRQLSPAQETYLH-NSKIIAESWLDEYKNMFYAL 387
            |||::...||||||||:|  |.|          |.||.:..||| |.|.:||.|:|||||..|:.
  Fly   412 CGGEMYDAPCSRIGHIYRGPRNH----------QPSPRKGDYLHKNYKRVAEVWMDEYKNYLYSH 466

  Fly   388 RPAARRIPLDHTYD--------ELQRMRKERRCHPFEWYLRHVSPELRMHFDELS----ATGTLR 440
            .        |..|:        |.:.:|.:..|..|:|::..|:.:|...:..:.    |.|.|:
  Fly   467 G--------DGLYESVDPGDLTEQKAIRTKLNCKSFKWFMEEVAFDLMKTYPPVDPPSYAMGALQ 523

  Fly   441 ---NEDRCVH--ARQKDSQPILASCYLSDITQWSMLRQSGQLSTHREL-------CLAVGF---G 490
               |::.|:.  .|:|.::..:.:|  :|..:.....|..:||..|:|       ||.|..   .
  Fly   524 NVGNQNLCLDTLGRKKHNKMGMYAC--ADNIKTPQRTQFWELSWKRDLRLRRKKECLDVQIWDAN 586

  Fly   491 MRIALEPC---GRNETVRRSQRWVRLGTH--LLH-AESHLCLD-NPLKDRLEMSTCRSHAVSQSF 548
            ..:.|..|   |.|      |.|.....|  |.| .|...||: .|....:..:.|.:....|.:
  Fly   587 APVWLWDCHSQGGN------QYWYYDYRHKQLKHGTEGRRCLELLPFSQEVVANKCDTDNRFQQW 645

  Fly   549 QF 550
            .|
  Fly   646 NF 647

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10000NP_651630.3 pp-GalNAc-T 113..422 CDD:133004 127/328 (39%)
Ricin_B_lectin 435..548 CDD:279046 32/134 (24%)
Pgant6NP_001261342.1 BcsA 199..>413 CDD:224136 91/231 (39%)
pp-GalNAc-T 205..502 CDD:133004 127/329 (39%)
RICIN 520..647 CDD:238092 31/134 (23%)
Ricin_B_lectin 520..645 CDD:279046 31/132 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3736
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11675
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.910

Return to query results.
Submit another query.