DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG10000 and Galnt3

DIOPT Version :9

Sequence 1:NP_651630.3 Gene:CG10000 / 43394 FlyBaseID:FBgn0039596 Length:558 Species:Drosophila melanogaster
Sequence 2:NP_001015032.2 Gene:Galnt3 / 366061 RGDID:1306443 Length:633 Species:Rattus norvegicus


Alignment Length:487 Identity:165/487 - (33%)
Similarity:256/487 - (52%) Gaps:50/487 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 ETSEDFYQYNIHLSNALGLIRKL-PVTRHHSCTTRNSILPAPLEANVSVVISFHNEARSMLLRTI 130
            |..|..:.:|...|:.:.|.|.| |.||...|..:......|| ...||:|.|||||.|.||||:
  Rat   142 ERGETKHCFNAFASDRISLHRDLGPDTRPPECIEQKFKRCPPL-PTTSVIIVFHNEAWSTLLRTV 205

  Fly   131 VSLLSRSPEDYLHELILVDDGSQRDVTLLDDLKRWMGGVFGSRYRLGLTFLRNQERMGLIWSRNR 195
            .|:|..||...|.|:|||||.|..|. |.:.|:.::     .::.: :..:|.|||.|||.:|..
  Rat   206 HSVLYSSPAILLKEIILVDDASVDDY-LHEKLEEYI-----KQFSI-VKIVRQQERKGLITARLL 263

  Fly   196 GASLASGRYVLFLDSHCEVNEGWLEPLLERLALNTNLAVSPLLDPIDPTTLSYRK----GNELLK 256
            ||::|:...:.|||:|||...|||||||.|:|.|....|||.:..||..|..:.|    |:...:
  Rat   264 GAAVATAETLTFLDAHCECFYGWLEPLLARIAENYTAVVSPDIASIDLNTFEFNKPSPYGSNHNR 328

  Fly   257 GGFDWSLHFHW-----LKRQLTNQESLEMPYQSPAFAGGVLMMSREWFLKLGSFNPYLKIWGGES 316
            |.|||||.|.|     .::|....|:  .|.::|.||||:..:||::|..:||::..::|||||:
  Rat   329 GNFDWSLSFGWESLPDHEKQRRKDET--YPIKTPTFAGGLFSISRDYFEHIGSYDEEMEIWGGEN 391

  Fly   317 IELAIKLWLCGGQIEIVPCSRIGHIFRRRHAFDFPPQSDRQLSPAQETYLHNSKIIAESWLDEYK 381
            ||::.::|.||||:||:|||.:||:||.:....||        ...:....|...:||.|:||||
  Rat   392 IEMSFRVWQCGGQLEIMPCSVVGHVFRSKSPHTFP--------KGTQVIARNQVRLAEVWMDEYK 448

  Fly   382 NMFYALRPAARRIPLDHTYDELQR---MRKERRCHPFEWYLRHVSPELRMHFDELS--ATGTLRN 441
            .:||.....|.:|....::.:|.:   ::|..:|..|.|||..:.||  ::..:|:  .:|.:::
  Rat   449 EIFYRRNTDAAKIVKQKSFGDLSKRFEIKKRLQCKNFTWYLNTIYPE--VYVPDLNPVISGYIKS 511

  Fly   442 --EDRCVHA---RQKDSQPILASCY---LSDITQWSMLRQSGQLSTHRELCLAVGFGMRIALEPC 498
              :..|:..   .|.|...||.:|:   .:...::|..|:. :.:..:||||....|: :.|:.|
  Rat   512 VGQPLCLDVGENNQGDKPLILYTCHGLGGNQYFEYSAQREI-RHNIQKELCLHATQGV-VQLKAC 574

  Fly   499 GRNETVRRSQRWVRLGTHLLHAESHLCLDNPL 530
                 |.:..|.:..|..:........|.|||
  Rat   575 -----VYKGHRTIAPGEQIWEIRKDQLLYNPL 601

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10000NP_651630.3 pp-GalNAc-T 113..422 CDD:133004 126/320 (39%)
Ricin_B_lectin 435..548 CDD:279046 23/104 (22%)
Galnt3NP_001015032.2 pp-GalNAc-T 188..493 CDD:133004 126/321 (39%)
Ricin_B_lectin 506..627 CDD:279046 23/103 (22%)
RICIN 507..629 CDD:238092 23/102 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3736
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D606683at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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