DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG10000 and Galnt12

DIOPT Version :9

Sequence 1:NP_651630.3 Gene:CG10000 / 43394 FlyBaseID:FBgn0039596 Length:558 Species:Drosophila melanogaster
Sequence 2:XP_232988.6 Gene:Galnt12 / 313233 RGDID:1562001 Length:576 Species:Rattus norvegicus


Alignment Length:490 Identity:171/490 - (34%)
Similarity:253/490 - (51%) Gaps:54/490 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 ETSEDFYQYNIHLSNALGLIRKLPVTRHHSCTTRN---SILPAPLEANVSVVISFHNEARSMLLR 128
            |.|...:|.||:||:.:.|.|:||...:..|....   ..||     ..||||:|:|||.|.|||
  Rat    90 EESVQRHQINIYLSDRISLHRRLPERWNPLCREVKYDYDNLP-----KTSVVIAFYNEAWSTLLR 149

  Fly   129 TIVSLLSRSPEDYLHELILVDDGSQRDVTLLDDLKRWMGGVFGSRYRLGLTFLRNQERMGLIWSR 193
            |:.|:|..||:..|.|:|||||.|.|     :.||..:........::.|  :|..:|.||:.:|
  Rat   150 TVYSVLETSPDILLEEVILVDDYSDR-----EHLKEPLANELSQLPKVRL--IRASKREGLVRAR 207

  Fly   194 NRGASLASGRYVLFLDSHCEVNEGWLEPLLERLALNTNLAVSPLLDPIDPTTLSYRKGN--ELLK 256
            ..|||.|.|..:.|||.|||.:||||||||:|:....:..|.|::|.||..|..| .||  |...
  Rat   208 LLGASAARGEVLTFLDCHCECHEGWLEPLLQRIHEKESAVVCPVIDVIDWNTFEY-LGNSGEPQI 271

  Fly   257 GGFDWSLHFHWLKRQLTNQESLEMP---YQSPAFAGGVLMMSREWFLKLGSFNPYLKIWGGESIE 318
            |||||.|.|.|.......::.:..|   .:||..|||:..:|:.:|..|||::..:::||||::|
  Rat   272 GGFDWRLVFTWHVVPQRERKLMRSPIDVIRSPTMAGGLFAVSKRYFEYLGSYDTGMEVWGGENLE 336

  Fly   319 LAIKLWLCGGQIEIVPCSRIGHIFRRRHAFDFPPQSDRQLSPAQETYLHNSKIIAESWLDEYKNM 383
            .:.::|.|||.:|..|||.:||:        ||.|:....|.|    |.||...||.|:|::|.:
  Rat   337 FSFRIWQCGGTLETHPCSHVGHV--------FPKQAPYSRSKA----LANSVRAAEVWMDDFKEL 389

  Fly   384 FYALRPAARRIPL-DHTYDELQRMRKERRCHPFEWYLRHVSPELRMHFDELSATGTLRN---EDR 444
            :|...|.||..|. |.|  |.:::|.:.:|..|:|:|..|.|||.:..|.....|.|.|   ...
  Rat   390 YYHRNPQARLEPFGDVT--ERKKLRAKLQCKDFKWFLDTVYPELHVPEDRPGFFGMLENRGLRGY 452

  Fly   445 CV------HARQKDSQPILASCYLSDITQW--SMLRQSGQLSTHR-ELCLAVGFGMRI-ALEPCG 499
            |:      ....:..|.:|..|:.....|:  ...||..:.:|.: |.|:||..|..: .::.| 
  Rat   453 CLDYNPPSENNVEGHQVLLYLCHGMGQNQFFEYTSRQEIRYNTRQPEACIAVEEGKDVLIMDLC- 516

  Fly   500 RNETVRRSQRWV--RLGTHLLHAESHLCLDNPLKD 532
             .:||..:|.:|  ..|| |:|.:|..|::...|:
  Rat   517 -KDTVPENQEFVLQEDGT-LVHKQSGKCVEATEKE 549

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10000NP_651630.3 pp-GalNAc-T 113..422 CDD:133004 124/314 (39%)
Ricin_B_lectin 435..548 CDD:279046 28/113 (25%)
Galnt12XP_232988.6 pp-GalNAc-T 134..428 CDD:133004 124/315 (39%)
Ricin_B_lectin 440..569 CDD:395527 28/113 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D606683at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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