DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG10000 and Galnt13

DIOPT Version :9

Sequence 1:NP_651630.3 Gene:CG10000 / 43394 FlyBaseID:FBgn0039596 Length:558 Species:Drosophila melanogaster
Sequence 2:XP_017447163.1 Gene:Galnt13 / 311039 RGDID:735044 Length:571 Species:Rattus norvegicus


Alignment Length:498 Identity:163/498 - (32%)
Similarity:271/498 - (54%) Gaps:57/498 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    74 QYNIHLSNALGLIRKLPVTRHHSCTTRNSILPAPLEANVSVVISFHNEARSMLLRTIVSLLSRSP 138
            |:|:..|:.:.|.|.||..|...|.|:  :.|..| .|.||||.|||||.|.||||:.|:::|||
  Rat    82 QFNLMASDLIALNRSLPDVRLEGCKTK--VYPDEL-PNTSVVIVFHNEAWSTLLRTVYSVINRSP 143

  Fly   139 EDYLHELILVDDGSQRD---VTLLDDLKRWMGGVFGSRYRLGLTFLRNQERMGLIWSRNRGASLA 200
            ...|.|:|||||.|:||   :||.:.:|         ...:.:..:|.:||.|||.:|.|||:.:
  Rat   144 HYLLSEVILVDDASERDFLKLTLENYVK---------TLEVPVKIIRMEERSGLIRARLRGAAAS 199

  Fly   201 SGRYVLFLDSHCEVNEGWLEPLLERLALNTNLAVSPLLDPIDPTTLSYRKGNELLKGGFDWSLHF 265
            .|:.:.|||:|||...|||||||.|:..:....|.|::|.|...|..|..|:::..|||:|.|:|
  Rat   200 KGQVITFLDAHCECTLGWLEPLLARIKEDRKTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNF 264

  Fly   266 HWL---KRQLTNQE-SLEMPYQSPAFAGGVLMMSREWFLKLGSFNPYLKIWGGESIELAIKLWLC 326
            .|.   :|::..:: ...:|.::|..|||:..:.|.:|.::|:::..:.|||||::|::.::|.|
  Rat   265 RWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRNYFEEIGTYDAGMDIWGGENLEMSFRIWQC 329

  Fly   327 GGQIEIVPCSRIGHIFRRRHAFDFPPQSDRQLSPAQETYLHNSKIIAESWLDEYKNMFYALRPAA 391
            ||.:|||.||.:||:||:...:.||..:...::       .|::.:||.|:||:|:.||.:.|..
  Rat   330 GGSLEIVTCSHVGHVFRKATPYTFPGGTGHVIN-------KNNRRLAEVWMDEFKDFFYIISPGV 387

  Fly   392 RRIPLDHTYDEL---QRMRKERRCHPFEWYLRHVSPEL---RMHFDELSATGTLRN--EDRCVH- 447
            .::    .|.::   :.:|:..:|.||.|||.::.|:.   |.::    :.|.:||  .::|:. 
  Rat   388 VKV----DYGDVSVRKTLRENLKCKPFSWYLENIYPDSQIPRRYY----SLGEIRNVETNQCLDN 444

  Fly   448 -ARQKDSQPILASCYLSDITQWSMLRQSGQLSTHRELCLAVG--FGMRIALEPCGRNETVRRSQR 509
             .|:::.:..:.:|:.....|........::.|. :|||.|.  .|..|.|: |   ..:|.:|.
  Rat   445 MGRKENEKVGIFNCHGMGGNQVFSYTADKEIRTD-DLCLDVSRLSGPVIMLK-C---HHMRGNQL 504

  Fly   510 W-VRLGTH-LLHAESHLCLD-NPLKD---RLEMSTCRSHAVSQ 546
            | ....|| |:|..:..||. ..:.|   .|.|.||....:.:
  Rat   505 WEYDAETHTLVHIITQSCLSMGKVADGSQHLTMETCNDSTLQK 547

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10000NP_651630.3 pp-GalNAc-T 113..422 CDD:133004 118/318 (37%)
Ricin_B_lectin 435..548 CDD:279046 30/124 (24%)
Galnt13XP_017447163.1 pp-GalNAc-T 118..418 CDD:133004 118/319 (37%)
Ricin_B_lectin 431..548 CDD:395527 30/122 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3736
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D606683at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

Return to query results.
Submit another query.