DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG10000 and galnt18

DIOPT Version :9

Sequence 1:NP_651630.3 Gene:CG10000 / 43394 FlyBaseID:FBgn0039596 Length:558 Species:Drosophila melanogaster
Sequence 2:XP_031756257.1 Gene:galnt18 / 100488804 XenbaseID:XB-GENE-959491 Length:608 Species:Xenopus tropicalis


Alignment Length:477 Identity:152/477 - (31%)
Similarity:234/477 - (49%) Gaps:43/477 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    72 FYQYNIHLSNALGLIRKLPVTRHHSCTTRNSILPAPLEANVSVVISFHNEARSMLLRTIVSLLSR 136
            :|.||.:||:.|.|.|.||..|...|  :|...|..| ..:|||..|.|||.|::||:|.|.::|
 Frog   118 YYGYNAYLSDRLPLDRPLPDFRPAGC--KNLTFPEDL-PQISVVFIFVNEAFSVILRSINSAINR 179

  Fly   137 SPEDYLHELILVDDGSQRDVTLLDDLKRWMGGVFGSRYRLGLTFLRNQERMGLIWSRNRGASLAS 201
            :|...|.|:|||||.|..: .|...|.:::.. |..|....:..:|:.::.|||.||..|...|:
 Frog   180 TPAKLLKEIILVDDNSSNE-ELRTKLAQYVED-FNKRKPGFIKVVRHSKQEGLIRSRVSGWRAAT 242

  Fly   202 GRYVLFLDSHCEVNEGWLEPLLERLALNTNLAVSPLLDPIDPTTLSYRKGNELLKGGFDWSLHFH 266
            ...|...|||.|.|.||.||:|.|:..:....:||..|.|:.......: ..|...||||.|...
 Frog   243 APVVALFDSHIEFNVGWAEPVLLRIKEDRTRVISPSFDNINYDDFELEQ-YPLNAQGFDWQLWCR 306

  Fly   267 WLK--RQLTNQESLEMPYQSPAFAGGVLMMSREWFLKLGSFNPYLKIWGGESIELAIKLWLCGGQ 329
            :|.  :....||:...|.::|:.. |..::.|.:|.::|..:..:.|:|||::|||:::|.|||.
 Frog   307 YLNPPKSWFKQENKTAPIRTPSLI-GCFIVDRLYFEEIGLLDEGMDIYGGENVELAVRVWQCGGS 370

  Fly   330 IEIVPCSRIGHIFRRRHAFDFPPQSDRQLSPAQETYLHNSKIIAESWLDEYKNMFYALRPAARRI 394
            :|::|||||.||.|....:      ..||:   |....|:..:||.|:||:|:..|    .|..|
 Frog   371 VEVIPCSRIAHIERAHKPY------TGQLA---EHVRRNALRVAEVWMDEFKSHVY----MAWNI 422

  Fly   395 PLDHT------YDELQRMRKERRCHPFEWYLRHVSPELRMHFDELSATGTLRNEDR---CV-HAR 449
            |.:.:      ....:.:||:.:|..|.|||..|.||:|.:.| :.|.|:|:|..:   |: ...
 Frog   423 PQEDSGIDFGDISSRKALRKKLQCKTFRWYLVSVYPEMRTYSD-IIAYGSLKNSVKAGLCLDQGP 486

  Fly   450 QKDSQPILASC--YLSDITQWSMLRQ--SGQLSTHRE----LCLAVGFGMRIALEPCGRNETVRR 506
            ..|:.||:..|  |:.....::..:|  .|.||...:    .|| |....|..|..|...:..|.
 Frog   487 DTDNTPIVYLCHGYVPQSIYYTSTQQLHIGALSPTIDDVDIKCL-VDVNSRPRLIECNYAKAKRM 550

  Fly   507 SQRW-VRLGTHLLHAESHLCLD 527
            ...| ...|..:.:.:|..||:
 Frog   551 KLYWDFNQGGPIQNKKSKRCLE 572

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10000NP_651630.3 pp-GalNAc-T 113..422 CDD:133004 106/316 (34%)
Ricin_B_lectin 435..548 CDD:279046 26/106 (25%)
galnt18XP_031756257.1 pp-GalNAc-T 156..457 CDD:133004 106/317 (33%)
RICIN 470..597 CDD:238092 25/104 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D606683at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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