DRSC/TRiP Functional Genomics Resources

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Protein Alignment snu and Abcg1

DIOPT Version :9

Sequence 1:NP_651628.1 Gene:snu / 43391 FlyBaseID:FBgn0039594 Length:808 Species:Drosophila melanogaster
Sequence 2:NP_445954.2 Gene:Abcg1 / 85264 RGDID:620294 Length:666 Species:Rattus norvegicus


Alignment Length:616 Identity:123/616 - (19%)
Similarity:224/616 - (36%) Gaps:205/616 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 AIISTDSAMAATNNDGG-TQPNAVAAWGAPA-------------NG------------------P 67
            |..|..:||.|:|.... |:|.:|.......             ||                  |
  Rat     6 AAFSVGTAMNASNYSAAMTEPKSVCVSVDEVVSSNVDELETDLLNGHLKKVDNNFTEAQRFSSLP 70

  Fly    68 RNTQAAVSVRHAFKAYG-------KKKNANQVLNNLNMTVPKGTIYGLLGASGCGKTTLLSCIVG 125
            |  :|||::.....:|.       :||....:|..::.....|.:..::|.||.||:||::.:.|
  Rat    71 R--RAAVNIEFKDLSYSVPEGPWWRKKGYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAG 133

  Fly   126 RRYMDAGEIFVLGGKPGTRG----SGVPG-----KRVG-YMPQEIALYGEFSIQETMMYFGWIFG 180
            .|            :.|.:|    :|:|.     ::|. |:.|:..|....::||.||....:..
  Rat   134 YR------------ETGMKGAVLINGMPRDLRCFRKVSCYIMQDDMLLPHLTVQEAMMVSAHLKL 186

  Fly   181 MD--------TKEILERLQFLLNFLDLPSEKRLVKNLSGGQQRRVSFAVALMHDPELLILDEPTV 237
            .:        .||||..|..      ||.......:|||||::|::.|:.|:::|.::..||||.
  Rat   187 QEKDEGRREMVKEILTALGL------LPCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTS 245

  Fly   238 GVDPLLRQSIWNHLVHITKAGQKTVIITTHYIEEARQAHTIGLMRSGHLLAEESPSVLLSIYK-C 301
            |:|                              .|.....:.||:.   ||:...|::.:|:: .
  Rat   246 GLD------------------------------SASCFQVVSLMKG---LAQGGRSIVCTIHQPS 277

  Fly   302 ISLEEVFLKLSRI-QSQ---KGDVTH-VNFSNNISLHAMAFGSKMD---KPSSSQEGGVVGLNFH 358
            ..|.|:|.:|..: |.|   :|.|:: |.:..::.|:...:.:..|   :.:|.:.|        
  Rat   278 AKLFELFDQLYVLSQGQCVYRGKVSNLVPYLRDLGLNCPTYHNPADFVMEVASGEYG-------- 334

  Fly   359 QSKEVLINDSNGSIYTLNQEPYSPPPSRRN------------NNPNDEESCQ---------DCYS 402
                    |.|..:....:|.......:|.            :.|.:|:|..         .|.:
  Rat   335 --------DQNSRLVRAVREGMCDSDYKRELGGDGDVNPFLWHRPAEEDSASMEGCHSFSASCLT 391

  Fly   403 NLCKITSKGKIRALLTKNM---LRMWRNVGVMLFIFAL------PVMQVI----------LFCLA 448
            ..| |..|....:::..::   ||:..::|:.|.|..|      ...:|:          ||.:.
  Rat   392 QFC-ILFKRTFLSIMRDSVLTHLRITSHIGIGLLIGLLYLGIGNEAKKVLSNSGFLFFSMLFLMF 455

  Fly   449 IGRDPQGLNLAIVNGEMNDTVRENC-YWEDGCHFKNLGCRYLSHLNTSVVKTYY--EDLDDAKEA 510
            ....|..|...:   ||:..:||:. ||..                   :|.||  :.:.|....
  Rat   456 AALMPTVLTFPL---EMSVFLREHLNYWYS-------------------LKAYYLAKTMADVPFQ 498

  Fly   511 VRKGTAWGAV--YISENFTDA--FIARANLG 537
            :....|:.::  :::...:||  |:..|.||
  Rat   499 IMFPVAYCSIVYWMTSQPSDAVRFVLFAALG 529

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snuNP_651628.1 LolD 73..290 CDD:224059 55/241 (23%)
ABC_DR_subfamily_A 74..286 CDD:213197 52/236 (22%)
pip_yhgE_Nterm 427..>474 CDD:276270 13/63 (21%)
ABC2_membrane_3 429..801 CDD:289468 26/132 (20%)
ABC2_membrane 601..769 CDD:279410
Abcg1NP_445954.2 3a01204 60..666 CDD:273361 112/562 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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