DRSC/TRiP Functional Genomics Resources

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Protein Alignment snu and abcg2a

DIOPT Version :9

Sequence 1:NP_651628.1 Gene:snu / 43391 FlyBaseID:FBgn0039594 Length:808 Species:Drosophila melanogaster
Sequence 2:XP_021325521.1 Gene:abcg2a / 735312 ZFINID:ZDB-GENE-050517-35 Length:644 Species:Danio rerio


Alignment Length:418 Identity:99/418 - (23%)
Similarity:186/418 - (44%) Gaps:81/418 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 NTQAAVSVRHAF-KAYGKKKNANQVLNNLNMTVPKGTIYGLLGASGCGKTTLLSCIVGRRYMD-- 130
            |...::.::..| |:...|||   :|..||..:..| :..:|||:|.||::.|..:..|:  |  
Zfish    37 NINYSLKMKSGFCKSKSTKKN---ILIGLNGIMKPG-LNAILGATGSGKSSFLDVLAARK--DPA 95

  Fly   131 --AGEIFVLGG-KPGTRGSGVPGKRV--GYMPQEIALYGEFSIQETMMYFGWI---FGMDTKEIL 187
              :||:.:.|. :|       |..:.  ||:.|:..:.|..:::|.:.:...:   ..:..:|..
Zfish    96 GLSGEVLIDGAPQP-------PNFKCLSGYVVQDDVVMGTLTVRENLRFSAALRLPKSIKQREKD 153

  Fly   188 ERLQFLLNFLDLP--SEKR----LVKNLSGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQS 246
            |:::.|:..|.|.  ::.|    |::.:|||:::|.:..:.|:.||.:|.|||||.|:|.....|
Zfish   154 EKVERLIQELGLSKVADSRVGTQLIRGVSGGERKRTNIGMELIIDPPVLFLDEPTTGLDASTANS 218

  Fly   247 IWNHLVHITKAGQ--KTVIITTHYIEEA--RQAHTIGLMRSGHLL----AEESPSVLLSI-YKC- 301
            :   |:.:.|.|.  :|:|::.|....:  |...::.|:..|.|:    |:::.|....| |.| 
Zfish   219 V---LMLLKKMGNNGRTIILSIHQPRYSIYRLFDSLTLLVGGKLVYHGPAQDALSYFSQIGYTCE 280

  Fly   302 --ISLEEVFLKLSRIQSQKGDVTHVNFSNNISLHAMAFGSKMDKPSSSQEGGVVGLNFHQSKEVL 364
              .:..:.||.:.     .||.:.|.. |.:....:    ..|:.|||.:|....|.....:..:
Zfish   281 PHNNPADFFLDVI-----NGDSSAVTL-NKLYEEVV----DQDQLSSSLKGIEDRLVEEYQRSSI 335

  Fly   365 INDSNGSIYTLNQ-EPYSPPPSRRNNNPNDEESCQDCYS-NLCKITSKGKIRALLTKNMLRMWRN 427
            ...::..:..:.| :.||..|..|...          || :.|.     :...:|.:....:..|
Zfish   336 FQQTHADLQRIVQGQDYSTRPKSRTIT----------YSTSFCH-----QFHWVLKRTFRNLMLN 385

  Fly   428 -------VGVMLFIFALPVMQVILFCLA 448
                   :|||:|: || |:..|.|.:|
Zfish   386 PQTSVAQIGVMIFL-AL-VVGAIFFGVA 411

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snuNP_651628.1 LolD 73..290 CDD:224059 62/241 (26%)
ABC_DR_subfamily_A 74..286 CDD:213197 60/232 (26%)
pip_yhgE_Nterm 427..>474 CDD:276270 11/29 (38%)
ABC2_membrane_3 429..801 CDD:289468 10/20 (50%)
ABC2_membrane 601..769 CDD:279410
abcg2aXP_021325521.1 PRK10535 43..638 CDD:333000 98/412 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.000

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