DRSC/TRiP Functional Genomics Resources

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Protein Alignment snu and abcg4a

DIOPT Version :9

Sequence 1:NP_651628.1 Gene:snu / 43391 FlyBaseID:FBgn0039594 Length:808 Species:Drosophila melanogaster
Sequence 2:XP_687685.2 Gene:abcg4a / 564842 ZFINID:ZDB-GENE-050517-39 Length:641 Species:Danio rerio


Alignment Length:450 Identity:103/450 - (22%)
Similarity:177/450 - (39%) Gaps:116/450 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    77 RHAFKAYGKKKNANQVLNNLNMTVPKGTIYGLLGASGCGKTTLLSCIVGRRYMD-AGEIFVLGGK 140
            |..|||         :|..|:.......:.|::|.||.||:||::.:.|.|... .|:|.| .|:
Zfish    72 RRGFKA---------LLKCLSGKFCSRELIGIMGPSGAGKSTLMNILAGYRETGMKGQILV-NGR 126

  Fly   141 PGTRGSGVPGKRVGYMPQEIALYGEFSIQETMMYFGWIFGMDTKEILERL-QFLLNFLDLP--SE 202
            |  |......|...|:.|:..|....:.:|.||....:...:..|:.:.| ..:|..|.|.  ::
Zfish   127 P--RDLRTFRKMSCYIMQDDMLLPHLTTREAMMVSANLKLNENMEVKKELVNEILTALGLQECAQ 189

  Fly   203 KRLVKNLSGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVHITKA---GQKTVII 264
            .|.: :|||||.:|::.|:.|:::|.::..||||.|:|    .:....:|.:.|:   |.:|:|.
Zfish   190 TRTI-SLSGGQCKRLAIALELVNNPPVMFFDEPTSGLD----SASCFQVVSLMKSLAQGGRTIIC 249

  Fly   265 TTHYIEEARQAHTIGLMRSGHLLAEESPSVLLSIYKCISLEEVFLKLSRIQSQ-----KGDVTH- 323
            |.|                       .||.        .|.|:|.|| .|.||     ||.|.: 
Zfish   250 TIH-----------------------QPSA--------KLFEMFDKL-YILSQGQCIYKGTVPYL 282

  Fly   324 VNFSNNISLHAMAFGSKMD---KPSSSQEGGVVGLNFHQSKEVLINDSNGSIYTLNQEPYSPPPS 385
            :.:..|:.||...:.:..|   :.:|.:.|.:..:.|...:..|.:|.:....:...:|.:..||
Zfish   283 IPYLKNLGLHCPTYHNPADFIIEVASGEYGDLNPVLFEAVQGGLCSDDSKKNSSDKNDPTTSCPS 347

  Fly   386 RRNNNPNDEES----------------------CQD-------CYSNLCKITSKGKIRALLTKNM 421
            :...:....|.                      |:|       ..|:||.....|.:...:..:.
Zfish   348 QCYPDSGYIEKHTFATSTLTQFCILFKRTFITICRDVVLTHLRVMSHLCIGVLIGLLYLNIGNDA 412

  Fly   422 LRMWRNVGVMLF-----IFALPVMQVILFCLAIGRDPQGLNLAIVNGEMNDTVRENC-YW 475
            .:::.|.|.:.|     :||..:..|:.|.|                ||...:||:. ||
Zfish   413 SKVFNNTGFLFFSMLFLMFAALMPTVLTFPL----------------EMGVFIREHLNYW 456

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snuNP_651628.1 LolD 73..290 CDD:224059 57/219 (26%)
ABC_DR_subfamily_A 74..286 CDD:213197 57/215 (27%)
pip_yhgE_Nterm 427..>474 CDD:276270 12/52 (23%)
ABC2_membrane_3 429..801 CDD:289468 12/52 (23%)
ABC2_membrane 601..769 CDD:279410
abcg4aXP_687685.2 3a01204 38..641 CDD:273361 102/449 (23%)
ABCG_EPDR 53..277 CDD:213180 67/253 (26%)
ABC2_membrane 372..574 CDD:279410 19/100 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.000

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