DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment snu and abch1

DIOPT Version :9

Sequence 1:NP_651628.1 Gene:snu / 43391 FlyBaseID:FBgn0039594 Length:808 Species:Drosophila melanogaster
Sequence 2:XP_021328839.1 Gene:abch1 / 558667 ZFINID:ZDB-GENE-050517-42 Length:713 Species:Danio rerio


Alignment Length:780 Identity:323/780 - (41%)
Similarity:446/780 - (57%) Gaps:71/780 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 SWSDPSAIISTDSAMAATNNDGGTQPNAVAAWGAPANGPRNTQAAVSVRHAFKAYGKKKNANQVL 93
            |.|.....:|..:.|...:.:.||....:.|        .:..||:......::|||.|    ||
Zfish     2 SGSGTHEALSGSTEMEQRSLESGTMKTDLEA--------GSFSAAIHCHDVCRSYGKLK----VL 54

  Fly    94 NNLNMTVPKGTIYGLLGASGCGKTTLLSCIVGRRYMDAGEIFVLGGKPGTRGSGVPGKRVGYMPQ 158
            ||||:|:|:|.||||||.|||||||||.||||...:..|.|.|||..|...|..||||.||||||
Zfish    55 NNLNLTLPQGQIYGLLGPSGCGKTTLLKCIVGTLKISRGHITVLGKPPAFPGHEVPGKMVGYMPQ 119

  Fly   159 EIALYGEFSIQETMMYFGWIFGMDTKEILERLQFLLNFLDLPSEKRLVKNLSGGQQRRVSFAVAL 223
            :||||.||:|..|:.:||.|.|:.:||...|:.||::|||||.:..|||||||||:||||...||
Zfish   120 DIALYNEFTISNTLWFFGRIHGLSSKETEARMSFLIDFLDLPQKHSLVKNLSGGQRRRVSLGAAL 184

  Fly   224 MHDPELLILDEPTVGVDPLLRQSIWNHLVHITKAGQKTVIITTHYIEEARQAHTIGLMRSGHLLA 288
            :.:|:|||||||||||||:||..||.|||.|.:.||.::|||||||||||||:|:||||:|.|||
Zfish   185 LQNPKLLILDEPTVGVDPVLRAKIWQHLVEIVRGGQVSIIITTHYIEEARQANTVGLMRNGRLLA 249

  Fly   289 EESPSVLLSIYKCISLEEVFLKLSRIQSQKGDVTHVNFSNNISLHAMAFGSKMDKPSSSQEGGVV 353
            |..|..::..:...:||..||:|.....|.|                        |..|.:|.::
Zfish   250 EGPPDAVMKQHNAATLETAFLQLCEDSDQSG------------------------PKQSPQGRLL 290

  Fly   354 GLNFHQSKEVLINDSNGSIYTLNQEPYSPPPSRRNNNPNDEESCQDCYSNLCK--ITSKGKIRAL 416
                         ||:.|..::..|  ...|..|.:...:...|:..:....:  |.....|.||
Zfish   291 -------------DSSPSPDSMRDE--IREPILRKSTSEEMPKCKADWKVRARHIIPKWSNIAAL 340

  Fly   417 LTKNMLRMWRNVGVMLFIFALPVMQVILFCLAIGRDPQGLNLAIVNGEMNDTVRENCYWEDGCHF 481
            :.|.|:||.|..|.:.|.|.|||:|:.|.||.||.||:.:::|:||.|.:.:.            
Zfish   341 MIKTMVRMRRLPGSLCFQFLLPVIQICLMCLCIGGDPKNIDVAVVNNESSPSA------------ 393

  Fly   482 KNLGCRYLSHLNTSVVKTYYEDLDDAKEAVRKGTAWGAVYISENFTDAFIARANLGRDSDDETID 546
              .....||.|:.:.:........||.:.:|.|..||.:...|||| :::.:..|......|.::
Zfish   394 --FSRSLLSFLDNTSINQVSLSHSDAFDGIRNGEYWGVIEFGENFT-SYLTKRMLQPRVSREVVE 455

  Fly   547 SSEVKVWLDMSNQQIGVMLNRDIQLAFRDFAMGLLGQCGSNPKLGDVPIQFRDPIYGTMNPSFTD 611
            ...|..|||::|:||.:||.:.:..||..|   :..:.||...:..|||:|.:||||:.|..||.
Zfish   456 GGSVHAWLDLTNRQIALMLQKKLHQAFEAF---MEKRLGSMSYMVAVPIKFEEPIYGSKNTDFTT 517

  Fly   612 FVAPGVILTIVFFLAVALTSSALIIERTEGLLDRSWVAGVSPFEILFSHVITQFVVMCGQTTLVL 676
            ||.||.:|:|.|:|||.||:.:.::||.||||||.||||||..|.:.:|:.:|..|:..|..|:|
Zfish   518 FVTPGAVLSITFYLAVGLTALSFVLERKEGLLDRCWVAGVSSLETMLAHLFSQLFVISVQIILLL 582

  Fly   677 IFMLVVFGVTNNGDLFWVIVLTLLQGMCGMCFGFLISSVCELERNAIQLALGSFYPTLLLSGVIW 741
            ||.|:||.:.|.|.|..||.|.:|||:.|:.||.:|||..:.|::|.|.|||.|||.|:||||||
Zfish   583 IFTLLVFNIPNEGSLALVISLIVLQGVTGISFGLVISSAIDDEQSANQAALGVFYPNLILSGVIW 647

  Fly   742 PIEGMPVVLRYISLCLPLTLATSSLRSILTRGWAILESDVYIGYVSTLSWIVGFLVLTLLVLRAK 806
            |:|.:|..|||:||.||.|.|:.:||.|:.|||.:....|:.|:..||.|...||:|..::|:.:
Zfish   648 PVECIPYPLRYLSLVLPQTYASEALRCIMYRGWGLSRMMVWRGFAVTLGWNTFFLMLATIILKLR 712

  Fly   807  806
            Zfish   713  712

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snuNP_651628.1 LolD 73..290 CDD:224059 133/216 (62%)
ABC_DR_subfamily_A 74..286 CDD:213197 129/211 (61%)
pip_yhgE_Nterm 427..>474 CDD:276270 18/46 (39%)
ABC2_membrane_3 429..801 CDD:289468 153/371 (41%)
ABC2_membrane 601..769 CDD:279410 89/167 (53%)
abch1XP_021328839.1 CcmA 38..>261 CDD:224054 135/226 (60%)
ABC2_membrane_3 352..705 CDD:315386 152/370 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170595441
Domainoid 1 1.000 183 1.000 Domainoid score I3362
eggNOG 1 0.900 - - E2759_KOG0059
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H18114
Inparanoid 1 1.050 560 1.000 Inparanoid score I1061
OMA 1 1.010 - - QHG55876
OrthoDB 1 1.010 - - D125121at33208
OrthoFinder 1 1.000 - - FOG0000498
OrthoInspector 1 1.000 - - mtm6564
orthoMCL 1 0.900 - - OOG6_103922
Panther 1 1.100 - - LDO PTHR43038
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2776
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1413.860

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