Protein Alignment snu and Abca3

DIOPT Version :10

• Sequence 1: NP_651628.1
• Gene: snu / 43391
• FlyBaseID: FBgn0039594
• Length: 808
• Species: Drosophila melanogaster
• Sequence 2: NP_608445.2
• Gene: Abca3 / 33103
• FlyBaseID: FBgn0031170
• Length: 1714
• Species: Drosophila melanogaster
• Alignment Length: 858
• Identity: 175/858 - (20%)
• Similarity: 317/858 - (36%)
• Gaps: 188/858 - (21%)

  Fly    67 PRNTQAAVSVRHAFKAYGKKKNANQVLNNLNMTVPKGTIYGLLGASGCGKTTLLSCIVGRRYMDA 131
            |......:.:||..|.:|.|    .|:..|:|.:.:..|..|||.:|.||||.:|.:.|.....:
  Fly   531 PEGKHIGLQMRHLKKRFGNK----MVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTS 591

  Fly   132 GEIFVLGGKPGTRGSGVPGKR--VGYMPQEIALYGEFSIQETMMYFGWIFGMDTKEILERLQFLL 194
            |...:.|....|   .:.|.|  :|..||...|:.|.|:...:.:|..:.|:..|.:.:.:...|
  Fly   592 GTAIINGSDIRT---NIEGARMSLGICPQHNVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKYL 653

  Fly   195 NFLDLPSEKRLVKN-LSGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVHITKAG 258
            ..::|..:..:..: ||||.:|::|...||..|.::::.|||:.|:||..|:.:|: |:...|.|
  Fly   654 KMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWD-LLQQEKVG 717

  Fly   259 QKTVIITTHYIEEAR-QAHTIGLMRSGHLLAEESPSVLLSIYK------CISLE-----EVFLKL 311
             :|:::|||:::||. ....|.:|..|.|..:.:...|...|.      |:..:     ||...|
  Fly   718 -RTLLLTTHFMDEADVLGDRIAIMCDGELKCQGTSFFLKKQYGSGYRLICVKRDDCETNEVTALL 781

  Fly   312 SR--------------IQSQKGDVTHVNFSNNISLHAMAFGSKMDKPSSSQEGGVVGLNFHQSKE 362
            ::              :..|..|.....|..       .|| ::::.|........|:.....:|
  Fly   782 NKYIPGLKPECDIGAELSYQLPDSASAKFEE-------MFG-QLEEQSDELHLNGYGVGITSMEE 838

  Fly   363 VLI-----NDSNGSIYTLNQEPYSPPPSRRNNNPNDEESCQDCYSNLCKITS-----KGKIRALL 417
            |.:     .|:.|:|.. ..|..:.....|..:.|:.......:|...::..     ..:.:|:|
  Fly   839 VFMKVGAEKDNTGNIKD-QHEIMNGGSGFRGEDDNESVQSDGIFSENRRLLQGLQLLSNQWKAML 902

  Fly   418 TKNMLRMWRNVGVMLFIFALPVMQVILFCLAIGRDPQG-------LNLAIVNGEMNDTVRENCYW 475
            .|..|..|||..::|....:||..|::..|.|  ..||       :.:::....:..||.:....
  Fly   903 LKKFLYTWRNKLLLLIQNIMPVFFVVVTILII--KTQGTFQELKPITISLTQYPLAVTVLDRSNV 965

  Fly   476 EDGCHFKNLGCRYLSHLNTSVVKTYYEDLDDAKEAVRKGTAWGAVYI-SENFTDAFIARANLGRD 539
            ::|..::              :...||||     |...|:.:|.... ::.|.|..:   :||:.
  Fly   966 QNGTGYE--------------IANKYEDL-----ARSYGSNYGLELTGTQGFEDYIL---DLGKT 1008

  Fly   540 SD---------DETIDSSEVKVWLDMSNQQIGVMLNRDIQLAFRDFAMG---------------- 579
            ..         ..||..|::..||:........:....:..|..|...|
  Fly  1009 IQVRINSRYLVAATITESKITAWLNNQALHTAPLTVNMVHNAIADKLFGSSVKIQVTNAPLPYTT 1073

  Fly   580 --LLGQCGSNPKLGDVPIQFRDPIYGTMNPSFTDFVAPGVILTIVFFLAVALTSSALIIERTEGL 642
              ||.|..:...|            ||...|...|....|....:.||.....|.|.:::...|:
  Fly  1074 STLLSQLSTGNNL------------GTQLASNLCFCMCFVSSIYILFLIKERESRAKLLQFVGGV 1126

  Fly   643 LDRSWVAGVSPFEILFSHVITQFVVMCGQTTLVLIFMLVVF---GVTNNGDLFWVIVLTLLQGMC 704
              :.|...:|.|...|:..|.        |.|:::..:|.|   |::..|:|....:|.||.|..
  Fly  1127 --KVWTFWLSQFICDFASYIV--------TALIVVITIVCFQETGLSTFGELGRYYLLLLLFGFA 1181

  Fly   705 GMCFGFLIS--------SVCELERNAIQLALGSFYPTLLLSGVIWPIEGMPVVLRYISLCLPLTL 761
            .:.|.:::|        ....:....|...:..|...:::|..::..:....:|.:|....|...
  Fly  1182 VLPFIYIMSLFFREPATGFARVSIVNIFCGMALFIVVVVMSSELFDTKDTADILGWIFRIFPHFS 1246

  Fly   762 ATSSLRSILTR--------------------------------GW---AILESDVYIGYVSTLSW 791
            ...||..:.|.                                .|   .:|...||:    .::.
  Fly  1247 LAMSLNKVYTNTATRNACAKAGALPPILLCELVPQCCNLKPYFAWEEPGVLPETVYM----AVTG 1307

  Fly   792 IVGFLVLTLLVLR 804
            :|.||::.:|..|
  Fly  1308 VVFFLIIIVLEFR 1320

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
snu	NP_651628.1	CcmA	74..311	CDD:440746	70/251 (28%)
		YadH	609..807	CDD:440604	43/242 (18%)
Abca3	NP_608445.2	rim_protein	<137..1708	CDD:130324	175/858 (20%)