Protein Alignment snu and Abca6

DIOPT Version :9

• Sequence 1: NP_651628.1
• Gene: snu / 43391
• FlyBaseID: FBgn0039594
• Length: 808
• Species: Drosophila melanogaster
• Sequence 2: XP_006247716.1
• Gene: Abca6 / 303639
• RGDID: 1308998
• Length: 1630
• Species: Rattus norvegicus
• Alignment Length: 825
• Identity: 168/825 - (20%)
• Similarity: 303/825 - (36%)
• Gaps: 254/825 - (30%)

  Fly    63 PANGPRNTQAAVSVRHAFKAYGKKKNANQVLNNLNMTVPKGTIYGLLGASGCGKTTLLSCIVG-- 125
            |.:.....:.|:.:|:..|.|..|....:.|..|...|.:..|..:||..|.||::||:.:.|
  Rat   471 PVDPEYQGKEAIRIRNIRKEYKGKSGKVEALKGLFFDVYESQITAVLGHGGAGKSSLLNILNGLS 535

  Fly   126 --------------RRYMDAGEIFVLGGKPGTRGSGVPGKRVGYMPQEIALYGEFSIQETMMYFG 176
                          ....|..||               .|.:|..||....:...:::|.:..|.
  Rat   536 VPTSGLATVYNKNLSEMQDLKEI---------------RKMIGVCPQHNVQFDALTVKENLTLFA 585

  Fly   177 WIFGMDTKEILERLQFLLNFLDLPS-EKRLVKNLSGGQQRRVSFAVALMHDPELLILDEPTVGVD 240
            .|.|:..:.:.:.:|.:|:.||:.: :..|.::||.||:|:::|.||::.||.:|:|||||.|:|
  Rat   586 NIKGIVPQSVAQEVQQILSELDMQTIQDELAEHLSEGQKRKLTFGVAILGDPRILLLDEPTAGLD 650

  Fly   241 PLLRQSIWNHLVHITKAGQKTVIITTHYIEEARQAHTIGLMRSGHLLAEESPSVLLS--IYKCIS 303
            |..||.:|..|..  :...:.::.:|.:.:||            .:||:.  .|:||  ..||..
  Rat   651 PFSRQRVWGFLKE--RRADRVILFSTQFTDEA------------DILADR--KVILSNGALKCTG 699

  Fly   304 LEEVFLK--------LSRIQSQKGDVTHV-NFSNN----ISLHAMA------------------F 337
             ..||||        ||...::..|...: :|.|:    ..|.|..                  |
  Rat   700 -SSVFLKRKWGLGYHLSLFMNETCDSEQLTSFINHHIPGAKLKAKTKEKLVYTLPLEKTSKFPEF 763

  Fly   338 GSKMDKPSSSQEGGVVGLNFHQSKEVLINDSNGSIYTLNQEPYSPPPSRRNNNPNDEESCQDCYS 402
            .|.:||.|..      ||   .:.||.::..|.....|..||.:.....:.....|.:|.
  Rat   764 FSDLDKYSGQ------GL---MNYEVSMSTLNEVFMNLEGEPSTTQDFEKGETLTDSDSL----- 814

  Fly   403 NLCKITSKGKIRALLTKNMLRMWR-------NVGVM-------LFIFALPVMQVI---------- 443
            |..::......:|..|.:.:.:||       .:.|:       .|:..||::.:.
  Rat   815 NEMEVAPPSLSKAQKTMSAMSLWRMQVCAIARLRVLKLRRERKAFLTFLPLLGISLIPLITEYMA 879

  Fly   444 ---------------LFCLAIGRDPQGLN---LAIVNGEMN--DTVRENCYWEDGCHFKNLGCRY 488
                           |:.|:.|:.||||.   |.|.|.|.|  |.|:.
  Rat   880 NALIEVKTNWEFKTDLYFLSPGQLPQGLRTSLLVINNTESNIEDFVQS----------------- 927

  Fly   489 LSHLNTSVVKTYYEDLDD--AKEAVRKGTAWGAVYISENFTDAFIARANLGRDSDDETIDSSEVK 551
            |.|.|..:      ::||  .:.|....:..||:.:|             ||..|.........|
  Rat   928 LKHQNIVL------EVDDFENRNATESLSYNGAIIVS-------------GRQKDYRFSAVCNTK 973

  Fly   552 ------VWLDMSNQQIGVMLNRDIQLAFRDFAMGLLGQCGSNPKLGDVPIQFRDPIYGTMNPSFT 610
                  :.:::.:..|..|||....:...:..:          ..|.|.:.|     |.:..|
  Rat   974 RLHCFPILMNVISNGILRMLNHTQHIRLEEDVL----------SSGIVVVWF-----GILEAS-- 1021

  Fly   611 DFVAPGVILTIVFFLA-----VALTSSALIIERTEGLLDRSWVAGVSPF-----EILFSHVITQF 665
                    |:|:|.:.     :|::|.:...::.:..|   |::|:.|.     :.|....:...
  Rat  1022 --------LSILFIVCSVSPHIAMSSISDFKKKADSQL---WISGLYPSAYWCGQALVDITLLSG 1075

  Fly   666 VVMCGQTTL--------------VLIFMLVVFGVTNNGDLFWVIVLTLL-------QGMCGMCFG 709
            :::.|..||              ||..:|:.||...: .:|...|::.:       .|:..:||.
  Rat  1076 ILLTGYITLYTTKLMHIYLTGEIVLSIVLLAFGCAAS-LVFLTYVISFVFGKKRKNSGLWSICFF 1139

  Fly   710 FLISSVCELERNAIQLALGSFYPTLLLSGVI----WPIEGMPVVL 750
            .:|:.:.:      .:.:..|...||:|.::    :.:..:.:||
  Rat  1140 IVITIMFD------TVLMDPFNEALLISAMMLVPSFSLNALLIVL 1178

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
snu	NP_651628.1	LolD	73..290	CDD:224059	61/233 (26%)
		ABC_DR_subfamily_A	74..286	CDD:213197	58/228 (25%)
		pip_yhgE_Nterm	427..>474	CDD:276270	18/83 (22%)
		ABC2_membrane_3	429..801	CDD:289468	70/402 (17%)
		ABC2_membrane	601..769	CDD:279410	32/185 (17%)
Abca6	XP_006247716.1	ABC2_membrane_3	35..420	CDD:289468
		ABC2_membrane_4	220..409	CDD:289500
		CcmA	480..795	CDD:224054	88/355 (25%)
		ABC_subfamily_A	482..705	CDD:213230	67/254 (26%)
		ABC2_membrane_3	859..1171	CDD:289468	67/382 (18%)
		ABC2_membrane_4	1007..1178	CDD:289500	33/195 (17%)
		CcmA	1279..1605	CDD:224054
		ABC_subfamily_A	1300..1514	CDD:213230

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E2759_KOG0059
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	2	1.900