Protein Alignment snu and Abca3

DIOPT Version :9

• Sequence 1: NP_651628.1
• Gene: snu / 43391
• FlyBaseID: FBgn0039594
• Length: 808
• Species: Drosophila melanogaster
• Sequence 2: XP_006246101.1
• Gene: Abca3 / 302973
• RGDID: 1307174
• Length: 1704
• Species: Rattus norvegicus
• Alignment Length: 898
• Identity: 175/898 - (19%)
• Similarity: 311/898 - (34%)
• Gaps: 277/898 - (30%)

  Fly    33 PSAIISTDSAMAATNNDGGTQPNAVAAWGAPANGPRNTQAAVSVRHAFKAYGKKKNANQVLNNLN 97
            ||........:.....:||....|.......|. |.:..|.:.::|..|.:.........:.:|.
  Rat   490 PSYWCGNPRTVVGKEEEGGDPEKAFRTEYFEAE-PEDLAAGIKIKHLSKVFQVGNKDKMGIRDLT 553

  Fly    98 MTVPKGTIYGLLGASGCGKTTLLSCIVGRRYMDAGEIFVLGGKPGTRGSGVP------GKRVGYM 156
            :.:.:|.|..|||.:|.||||.:|.:.|.....:|..::       ||..:.      .|.:|..
  Rat   554 LNLYEGQITVLLGHNGAGKTTTMSMLTGLFPPTSGHAYI-------RGYEISQDMVQIRKSLGLC 611

  Fly   157 PQEIALYGEFSIQETMMYFGWIFGMDTKEILERLQFLLNFLDLPSEKR--LVKNLSGGQQRRVSF 219
            ||...|:...::.|.:.::..:.|:..::..|.::.:|:.|.| .:||  ..|.||||.:|:::.
  Rat   612 PQHDVLFDNLTVAEHLYFYAQLKGLSVQKCPEEVKQMLHTLGL-EDKRDSRSKFLSGGMKRKLAI 675

  Fly   220 AVALMHDPELLILDEPTVGVDPLLRQSIWNHLVHITKAGQKTVIITTHYIEEA-RQAHTIGLMRS 283
            .:||:...::|:|||||.|:|.:.|::||:.|..  :...:||::|||:::|| .....|.::..
  Rat   676 GIALIAGSKVLMLDEPTSGMDAVSRRAIWDLLQQ--QKSDRTVLLTTHFMDEADLLGDRIAILAK 738

  Fly   284 GHLLAEESPSVLLSIYKCISLEEVFLKLSRIQSQK-GDVTHVNFSNNISLHAMAFGSKMDKPSSS 347
            |.|             :|.. ..:|||      || |...|:..              :.:|..:
  Rat   739 GEL-------------QCCG-SSLFLK------QKYGAGYHMTL--------------VKEPHCN 769

  Fly   348 QEGGVVGLNFHQSKEVLINDSNGSIYTLNQEPYSPPPSRRNNNPNDEESCQDCYSNLCKITSKGK 412
            .| |:..|..|.....::....|:     :..:..|          :||.....|...|:..|.|
  Rat   770 PE-GISQLVHHHVPNAMLESHAGA-----ELSFILP----------KESTHRFESLFAKLEKKQK 818

  Fly   413 IRALLTKNMLRMWRNVGVMLFIFALPVMQVILFCLAIGRDPQGLNLAIVNGEMNDTVRENCYWED 477
                          .:|:..|..::..|:.:.  |.:|:        :|:..|:
  Rat   819 --------------ELGIASFGASVTTMEEVF--LRVGK--------LVDTSMD----------- 848

  Fly   478 GCHFKNLGCRYLSHLNTSVVKTYYEDLDDAKEAVRKGTAWGAVYISENFTDAFIARANLGRDSDD 542
                       :..:....::..:|         |:.:.|.   :..|..........:|
  Rat   849 -----------IQAIQLPALQYQHE---------RRASDWA---LDSNLCGVMDPTNGIG----- 885

  Fly   543 ETIDSSEVKVWLD----MSNQQIGVMLNRDIQLAFRDFAM--------------GLLGQCGSNPK 589
            ..|:..||.|.|:    :..||...|..:....::|::.|              .||....::..
  Rat   886 ALIEEEEVLVKLNTGLALHCQQFWAMFLKKAAYSWREWRMVAAQILVPVTCLTLALLAINYTSEI 950

  Fly   590 LGDVPIQFRDPIYGTMNPSFTDFVAPGVILTIVFFLAVALTSSALIIERTEGLLDRSWVAGVSPF 654
            ..|.|::.....|||   :...|..||              :|.|..:.:|.|.|........|.
  Rat   951 FDDPPLKLSLNEYGT---TVVPFSVPG--------------TSRLGQQLSEHLRDMLQAERQEPR 998

  Fly   655 EILFSHVITQFVVM------------C---------GQTTLV---------------------LI 677
            |:|..  :.:|:|.            |         |:.|:|                     |:
  Rat   999 EVLGD--LEEFLVFRASVEGGGFNERCLVATSFKDSGERTVVTALFNNQAYHSPATALAIVDNLL 1061

  Fly   678 FML---------------------VVFGVTNNGDLFWVIVLTLLQGMCGMCFGFLISSVCE--LE 719
            |.|                     |.....|.|...:.|.|.||..|..:...|.|.:|.|  ::
  Rat  1062 FKLLCGPRASIEISNYPQPRSTLQVAKDQFNEGRKGFDIALNLLIAMAFLASTFSILAVSERAVQ 1126

  Fly   720 RNAIQLALGSFYPTLLLSGVIWPIEGMPVVLRYISLCLPLTLATSSLRS---------------- 768
            ...:|...|....|..||.::|.:         ||..:|..|.....|:
  Rat  1127 AKHVQFVSGVHVATFWLSALLWDL---------ISFLVPSLLLLVVFRAFDVHAFTRDGHMADLL 1182

  Fly   769 --ILTRGWAIL------------ESDVY--IGYVSTLSWIVGFLVLTLLVLRA 805
              ::..||||:            .|..|  :...:.||.|..|:|:|::.:.|
  Rat  1183 LLLMLYGWAIIPLMYLLSFFFSAASTAYTRLTIFNILSGIATFIVVTIMRIPA 1235

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
snu	NP_651628.1	LolD	73..290	CDD:224059	61/225 (27%)
		ABC_DR_subfamily_A	74..286	CDD:213197	60/220 (27%)
		pip_yhgE_Nterm	427..>474	CDD:276270	7/46 (15%)
		ABC2_membrane_3	429..801	CDD:289468	84/486 (17%)
		ABC2_membrane	601..769	CDD:279410	46/250 (18%)
Abca3	XP_006246101.1	rim_protein	<206..1699	CDD:130324	175/898 (19%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	2	1.910