Protein Alignment snu and Abca12

DIOPT Version :9

• Sequence 1: NP_651628.1
• Gene: snu / 43391
• FlyBaseID: FBgn0039594
• Length: 808
• Species: Drosophila melanogaster
• Sequence 2: XP_237242.6
• Gene: Abca12 / 301482
• RGDID: 1304586
• Length: 2595
• Species: Rattus norvegicus
• Alignment Length: 593
• Identity: 148/593 - (24%)
• Similarity: 246/593 - (41%)
• Gaps: 134/593 - (22%)

  Fly    34 SAIISTDSAMAATNNDGG-TQPNAVAAWGAPAN---GPRNTQAAVSVRHAFKAYGKKKNANQVLN 94
            :.::.|:..|.:||.... |.|:.    ..|:|   .|::.|..|::....|:||.|    ..::
  Rat  1306 NGLMFTNIMMQSTNPSANKTSPDC----AFPSNIEPEPKDLQVGVALHGVTKSYGSK----TAVD 1362

  Fly    95 NLNMTVPKGTIYGLLGASGCGKTTLLSCIVGRRYMDAGEIFVLGGKPGTRGSGVPGKRVGYMPQE 159
            |||:...:|.|..|||.:|.||||.:|.:.|.....||.|||.|....|..:.| .|.:|...|.
  Rat  1363 NLNLNFYEGHITSLLGPNGAGKTTTISMLTGLFGATAGTIFVYGKDIKTDLNTV-RKNMGVCMQH 1426

  Fly   160 IALYGEFSIQETMMYFG------WIFGMDTKEILERLQFLLNFLDLPSEK-RLVKNLSGGQQRRV 217
            ..|:...:.:|.::.:|      |    ..|::.|.::..|....|.|.: :.|..||||.:|::
  Rat  1427 DVLFSYLTTKEHLLLYGSIKVPHW----TKKQLHEEVKRTLKDTGLYSHRHKRVGTLSGGMKRKL 1487

  Fly   218 SFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVHITKAGQKTVIITTHYIEEAR-QAHTIGLM 281
            |.::||:....::|||||:.||||..|:|||: ::...|.. :|:|::||:::||. .:..|..:
  Rat  1488 SISIALIGGSRVVILDEPSTGVDPCSRRSIWD-VISKNKTA-RTIILSTHHLDEAEVLSDRIAFL 1550

  Fly   282 RSGHLLAEESPSVL---------LSIYKCIS---------------------LEEVFLKLSRIQS 316
            ..|.|....||..|         |::.|..|                     |.|.:||    :.
  Rat  1551 EQGGLRCCGSPFYLKEAFGDGYHLTLTKKKSPNLDTNAICDTVAVTAMIQSHLPEAYLK----ED 1611

  Fly   317 QKGDVTHV--NFSNNISLHAMAFGSKMDKPSSSQEGGVVGLNFHQSKEVLIN---DS----NGSI 372
            ..|::.:|  .||..:|...::....:||.......|..|::....:||.:|   ||    |.|:
  Rat  1612 IGGELVYVLPPFSTKVSGAYLSLLRALDKGMGKLNIGCYGISDTTVEEVFLNLTKDSQKCGNMSL 1676

  Fly   373 YTLNQEPYSPPPSRRNNNPND-----------------EESCQDCYSNLCKITSKGKIRALLTK- 419
            ..|.|.....|.:...:.|:|                 .....|.:..|.|     ||.|:|.|
  Rat  1677 EHLTQRKVGNPSANGTSTPDDLSVSSSNFTDRDDKVLTRSERLDGFGLLLK-----KIMAILIKR 1736

  Fly   420 --NMLRMWRNVGVMLFIFALPVMQVILFCLAIGRDPQGLNLAIVNGEMNDTVRENCYWEDGCHFK 482
              :..|.|:.      :.|..|:.::....|:|.           |.:.|:  .|.|.|
  Rat  1737 FHHTRRNWKG------LIAQVVLPIVFVATAMGL-----------GTLRDS--SNSYPE------ 1776

  Fly   483 NLGCRYL---SHLNTSVVKTYYEDLDDAKEAVRKGTAW---GAVYISENFTDA-FIARANLGR-D 539
                 .|   |....|....:|.:.|.:..|: ....|   |...:..|.:|: .:.:.|||: :
  Rat  1777 -----LLISPSIYGNSEQTAFYANFDPSTNAL-VSALWNFPGIDNVCLNTSDSQCLKKDNLGKWN 1835

  Fly   540 SDDETIDS 547
            :..|.||:
  Rat  1836 TSGEAIDN 1843

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
snu	NP_651628.1	LolD	73..290	CDD:224059	72/224 (32%)
		ABC_DR_subfamily_A	74..286	CDD:213197	71/219 (32%)
		pip_yhgE_Nterm	427..>474	CDD:276270	7/46 (15%)
		ABC2_membrane_3	429..801	CDD:289468	25/127 (20%)
		ABC2_membrane	601..769	CDD:279410
Abca12	XP_237242.6	ABC2_membrane_3	<1006..1267	CDD:289468
		NosY	<1108..1269	CDD:224196
		ZnuC	1346..1570	CDD:224046	75/234 (32%)
		ABC_subfamily_A	1350..1565	CDD:213230	73/225 (32%)
		ABC2_membrane_3	<1913..2174	CDD:289468
		CcmA	2253..2567	CDD:224054
		ABC_subfamily_A	2254..2477	CDD:213230

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E2759_KOG0059
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	3	2.810