DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment snu and Abca16

DIOPT Version :9

Sequence 1:NP_651628.1 Gene:snu / 43391 FlyBaseID:FBgn0039594 Length:808 Species:Drosophila melanogaster
Sequence 2:XP_038957107.1 Gene:Abca16 / 293444 RGDID:1563534 Length:1680 Species:Rattus norvegicus


Alignment Length:861 Identity:182/861 - (21%)
Similarity:328/861 - (38%) Gaps:206/861 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 PRNTQAAVSVRHAFKAYGKKKNANQVLNNLNMTVPKGTIYGLLGASGCGKTTLLSCIVGRRYMDA 131
            |.|.:|.:.::|..|.: |.|.|   :|||::.:.:|.:..|||.:|.||||.||.:.||.....
  Rat   509 PSNLEAGIQIKHLHKEF-KTKPA---INNLSLNIYEGQVTVLLGHNGAGKTTTLSVLTGRFAATR 569

  Fly   132 GEIFVLGGKPGTRGSGVPGKRVGYMPQEIALYGEFSIQETMMYFGWIFGMDTKEILERLQFLLNF 196
            ||.::.|.......:.: .|.:|:.||...|:.:.::.|.:.::..|.|.........:..:|:.
  Rat   570 GEAYINGYNISDNMAEI-RKDLGFCPQHDLLFDDLTLSEHLFFYCMIKGHPQNINCVEINRMLSV 633

  Fly   197 LDLPSE-KRLVKNLSGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVHITKAGQK 260
            .:|... ..|..::|||.:|::|..:|||...:::|||||:.|:||:.|::.|:.|.|..:  .:
  Rat   634 FNLQENYHTLSGSVSGGVRRKLSIILALMGGSKVVILDEPSSGMDPMSRRATWDILQHYKQ--NR 696

  Fly   261 TVIITTHYIEEAR-QAHTIGLMRSGHLLAEESPSVLLSIYKC---ISLE-EVFLKLSRI-----Q 315
            |:::||||::||. ....|.:|..|.|....|...|..||..   |.|| |.:..:..|     |
  Rat   697 TILLTTHYMDEADVLGDRIAIMVRGTLHCCGSSVFLKQIYGAGYHIVLEKEPYCDVDNIIAMIQQ 761

  Fly   316 SQKGDVTHVNFSNNISL-----HAMAFGSKMDKPSSSQEG-GVV--GLNFHQSKEVLINDS---- 368
            ...|.:...:..|.:|.     :...|.:...:....|:. |:.  |.:....:||.:..:    
  Rat   762 HVPGSMLENDIGNELSFILPKKYVSRFETLFTELEMRQKALGIANFGASITTMEEVFLKVNKLAA 826

  Fly   369 -NGSIYTLNQEPYSPPPSRRNNNPNDEESCQDCYSN--------LCKITS----------KGKIR 414
             ..||.|:  :||.....:..   .||:...:...|        |.:|.:          :.:..
  Rat   827 PQRSIQTI--QPYYLTYKKMR---QDEQQNVNILRNYNKPIFPYLREIATVKFNTGVPLYRQQFY 886

  Fly   415 ALLTKNMLRMWRNVGVML--FIFALPVMQVILFCLAI-------------------------GRD 452
            ::..|..|.:.||..:|.  .|..|.|...:|..|.:                         |..
  Rat   887 SMFIKRALFIGRNWKLMFLQIIVVLVVTTYLLLSLHLDDNDIPERELNLSHYGKTIVPYSISGNS 951

  Fly   453 PQGLN---------------LAIVNGEMNDTVRENCYWEDGCHFKNLGCRYLSHLNTSVVKTYYE 502
            ...||               |..:.|:||:.:.||   :|...|..:........|.:|:..::.
  Rat   952 DLALNLIKNLKIFLKSKNQSLKKIKGDMNNYILEN---KDCRTFCIIALSIKVERNKTVLTIFFN 1013

  Fly   503 DLDDAKEAVRKGTAWGAVYISENFTDAFIARANLGRDSDDETIDSSEVKVWLDMSNQQIGVMLNR 567
            :           .|:.:..||.:..|..:.....|||:.....:..:.                 
  Rat  1014 N-----------EAYHSPAISLSILDNILFMTLSGRDASITAFNKPQP----------------- 1050

  Fly   568 DIQLAFRDFAMGLLGQCGSNPKLGDVPIQFRDPIYGTMNPSFTDFVAPGVILTIVFFLAVALTSS 632
                         |...|||..          |:.|..           ::..:.|.::|.:.|.
  Rat  1051 -------------LPHYGSNTV----------PVNGLQ-----------IVQCLAFGISVVVGSF 1081

  Fly   633 AL--IIERTEGLLDRSWVAGVSP----FEILFSHVITQFVVMCGQTTLVLIFMLVVFGVTNNGDL 691
            ::  :.||........::.||..    ...|...:|..|...|....:.....|..|.|..|  .
  Rat  1082 SIQTVTERISQAKHIQFLTGVCVLTYWLSALLCDLIFFFFACCVLLGIFRFCQLEAFVVHYN--F 1144

  Fly   692 FWVIVLTLLQGMCGMCFGFLISSVCELERNA-IQLALGSFYPTLLLSGVIWPI-----EGMP--- 747
            ...|::.:|.|.|.:...:|.|.:......| |::.|.:::.| :.|.:|:.|     |..|   
  Rat  1145 LDTILIFMLYGWCVVPLTYLGSFLFNSSTAAYIKITLFNYFST-MFSIIIYTIVQFYGEDFPALI 1208

  Fly   748 -VVLRYISLCLP---LTLATS--------------SLRSI-LTRGWAILESDVY------IG-YV 786
             ::::.|.:.||   |.::.|              ..||| :......::::||      || ::
  Rat  1209 HILIKTILMALPSYNLAMSISKYFDDYEVKRLCAREFRSIYMDCSEPFIQNNVYGFGEHGIGKFL 1273

  Fly   787 STLSWIVGFLVLTLLV 802
            .||: .:|.:.|.||:
  Rat  1274 ITLA-TMGLVFLLLLL 1288

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snuNP_651628.1 LolD 73..290 CDD:224059 66/218 (30%)
ABC_DR_subfamily_A 74..286 CDD:213197 65/213 (31%)
pip_yhgE_Nterm 427..>474 CDD:276270 16/88 (18%)
ABC2_membrane_3 429..801 CDD:289468 78/454 (17%)
ABC2_membrane 601..769 CDD:279410 37/200 (19%)
Abca16XP_038957107.1 rim_protein <163..1664 CDD:130324 182/861 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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