DRSC/TRiP Functional Genomics Resources

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Protein Alignment snu and Abca5

DIOPT Version :9

Sequence 1:NP_651628.1 Gene:snu / 43391 FlyBaseID:FBgn0039594 Length:808 Species:Drosophila melanogaster
Sequence 2:NP_775429.1 Gene:Abca5 / 286970 RGDID:628661 Length:1642 Species:Rattus norvegicus


Alignment Length:879 Identity:172/879 - (19%)
Similarity:328/879 - (37%) Gaps:235/879 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 NNDGGTQPNAVAAWGAPANGPRNTQAAVSVRHAFKAYGKKKNANQVLNNLNMTVPKGTIYGLLGA 111
            |.:|....|.:.   .|.:.....:.|:.:....|||.||....:.|.||:..:.:|.|..|||.
  Rat   454 NINGNISLNEIV---EPVSSEFIGKEAIRISGIQKAYRKKNETVEALRNLSFDIYEGQITALLGH 515

  Fly   112 SGCGKTTLLS-----C--------IVGRRYMDAGEIFVLGGKPGTRGSGVPGKRVGYMPQEIALY 163
            ||.||:||::     |        |.|.|..:..|:|            ...|.:|..||....:
  Rat   516 SGTGKSTLMNILCGLCPPSDGFASIYGHRVSEIDEMF------------EARKMIGICPQSDMNF 568

  Fly   164 GEFSIQETMMYFGWIFGMDTKEILERLQFLLNFLDLPSEK-RLVKNLSGGQQRRVSFAVALMHDP 227
            ...:::|.:.....:.|:....|::.:|.:|..||:.:.| ...|.|||||:|::|..:|::.:|
  Rat   569 DVLTVEENLSILASVKGIPANNIIQEVQKVLLDLDMQAIKDNQAKKLSGGQKRKLSLGIAVLGNP 633

  Fly   228 ELLILDEPTVGVDPLLRQSIWNHLVHITKAGQKTVIITTHYIEEARQAHTIGLMRSGHLLAEESP 292
            ::|:|||||.|:||..|..:|| |:...||.:.|| .:||:::||            .:||:...
  Rat   634 KILLLDEPTAGMDPCSRHIVWN-LLKYRKANRVTV-FSTHFMDEA------------DILADRKA 684

  Fly   293 SVLLSIYKCISLEEVFLK---------------------LSRIQSQKGDVTHVNFSNNISL-HAM 335
            .:...:.||:. ..:|||                     ||.:..|......:...|:..: :::
  Rat   685 VISQGMLKCVG-SSIFLKSKWGIGYRLSMYIDRYCATESLSSLVRQHIPAAALLQQNDQQIVYSL 748

  Fly   336 AFGSKMDKPSSSQEGGVVGLNFHQSKEVLINDSNG-SIYTL-------------NQEPYSPPPSR 386
            .| ..|||.|    |....|:.|.:..|:   |.| |:.||             :|..||....:
  Rat   749 PF-KDMDKFS----GLFSALDIHSNLGVI---SYGVSMTTLEDVFLKLEVEAEIDQADYSVFTQQ 805

  Fly   387 RNNNPNDEESCQDCYSNLC------------------KITSKGKIRALLTKNMLRMWRNVGVMLF 433
            ......|.:|..:...:|.                  ::::..|...|..|...:..|:|.::|.
  Rat   806 PREEETDSKSFDEMEQSLLILSETKASLVSTMSLWKQQVSTIAKFHFLSLKRESKSVRSVLLLLL 870

  Fly   434 IF-----------------ALPVMQV-ILFCLAIGRDPQGLNLAIV-----NGEMNDTV----RE 471
            ||                 .:|:..| .|:.|..|..|.....:::     :.::||.:    ::
  Rat   871 IFFAVQIFMFLVHHSFKNAVVPIKLVPDLYFLKPGDKPHKYKTSLLLQNSTDSDINDLIDFFTQQ 935

  Fly   472 N---CYWEDGCHFKNLGCRYLSHL-NTSVVKTYYEDLDDAKEAVRKGTAWGAVYISEN-FTDAFI 531
            |   ..:.|.        .|:|.. :::.:.....:.|....||...|...::.:..| .::.::
  Rat   936 NIIVAMFNDS--------DYVSAAPHSAALNVVQSEKDYVFTAVFNSTMVYSLPVMMNIISNYYL 992

  Fly   532 ARANLGRDSDDETIDSSEVKVWLDMSNQQIGVMLNRDIQLAFRDFAMGLLGQCGSNPKLGDVPIQ 596
            ...|:          :..:::|.....|:|..::.: ::|.|:...:|::             :.
  Rat   993 YHLNV----------TDTIQIWSTPFIQEITDIVFK-VELYFQAALLGII-------------VT 1033

  Fly   597 FRDPIYGTMN------PSFTD-----------FVAPGVILTIVFFLAVALTSSALIIERTEGLLD 644
            ...|.:...|      .::|.           ::...|:...:||:.:.|...:|.         
  Rat  1034 AMPPYFAMENAENHKIKAYTQLKLSGLLPSAYWIGQAVVDIPLFFVVLTLMLGSLF--------- 1089

  Fly   645 RSWVAGVSPFEILFSHVITQFVVMCGQTTLVLIFMLVVFGVTNNGDLFWVIVLTLLQGMC----- 704
             ::..|:..:.:.|..|:...:.......|........|....|...||..:.::....|     
  Rat  1090 -AFHHGLYFYPVKFLAVVFCLIAYVPSVILFTYIASFTFKKILNTKEFWSFIYSVTALACVAVTE 1153

  Fly   705 -GMCFGFLISSVCELERNAIQLALGSFYPTLLLSGVIWPIEGMPVVLRYISLCLPLTLATSSLRS 768
             ....|:.:::|              |:.|..::..|:|:.|          || ::....|.::
  Rat  1154 ITFFLGYGVTAV--------------FHYTFCIAIPIYPLLG----------CL-ISFIKGSWKN 1193

  Fly   769 I-----LTRGWAILESDVYIGYVSTLSWIVGFLV 797
            |     ....|..|...|.:.|:..:.||  ||:
  Rat  1194 IPKTENAYNPWDRLLVAVIMPYLQCVLWI--FLL 1225

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snuNP_651628.1 LolD 73..290 CDD:224059 71/230 (31%)
ABC_DR_subfamily_A 74..286 CDD:213197 68/225 (30%)
pip_yhgE_Nterm 427..>474 CDD:276270 13/76 (17%)
ABC2_membrane_3 429..801 CDD:289468 63/429 (15%)
ABC2_membrane 601..769 CDD:279410 26/190 (14%)
Abca5NP_775429.1 ABC2_membrane_3 <214..416 CDD:289468
CcmA 476..788 CDD:224054 94/346 (27%)
ABC_subfamily_A 478..701 CDD:213230 73/249 (29%)
ABC2_membrane_3 <957..1224 CDD:289468 46/327 (14%)
CcmA 1288..1615 CDD:224054
ABC_subfamily_A 1290..1521 CDD:213230
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0059
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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