DRSC/TRiP Functional Genomics Resources

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Protein Alignment snu and Abca8b

DIOPT Version :10

Sequence 1:NP_651628.1 Gene:snu / 43391 FlyBaseID:FBgn0039594 Length:808 Species:Drosophila melanogaster
Sequence 2:NP_038879.2 Gene:Abca8b / 27404 MGIID:1351668 Length:1620 Species:Mus musculus


Alignment Length:233 Identity:76/233 - (32%)
Similarity:122/233 - (52%) Gaps:17/233 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    86 KKNANQVLNNLNMTVPKGTIYGLLGASGCGKTTLLSCIVGRRYMDAGEIFVLGGKPGTRGSGVPG 150
            ||.|.....|::..|.||.|.||||.:|.||:|.|..|.|...:.||::.:.|.:.|    ..||
Mouse  1297 KKKAKIATRNVSFCVRKGEILGLLGHNGAGKSTSLKMISGDTKVTAGQVLLKGSREG----DTPG 1357

  Fly   151 KRVGYMPQEIALYGEFSIQETMMYFGWIFGMDTKEILERLQFLLNFLDLPSE-KRLVKNLSGGQQ 214
             .:||.|||.||:...:::|.:..|..:.|:........:..|.:.|.|..: |..||.||.|.:
Mouse  1358 -FLGYCPQENALWPNLTVKEHLEIFAAVRGLRKSHAAVAITRLADALKLQDQLKSPVKTLSEGVK 1421

  Fly   215 RRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVHITKAGQKTVIITTHYIEEARQ-AHTI 278
            |::.|.::::.:|.:|:||||:.|:||..:|.||..:..|.|...:..::||||:.||.. ...:
Mouse  1422 RKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIWQAIRAIIKNTDRGALLTTHYMAEAEALCDRV 1486

  Fly   279 GLMRSG---------HLLAEESPSVLLSIYKCISLEEV 307
            .::.||         ||.::.....||.: |..:||:|
Mouse  1487 AILVSGRLRCIGSIQHLKSKFGKDYLLEM-KVKTLEQV 1523

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snuNP_651628.1 CcmA 74..311 CDD:440746 76/233 (33%)
YadH 609..807 CDD:440604
Abca8bNP_038879.2 rim_protein <265..1596 CDD:130324 76/233 (33%)
Blue background indicates that the domain is not in the aligned region.

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