DRSC/TRiP Functional Genomics Resources

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Protein Alignment snu and elf1

DIOPT Version :9

Sequence 1:NP_651628.1 Gene:snu / 43391 FlyBaseID:FBgn0039594 Length:808 Species:Drosophila melanogaster
Sequence 2:NP_593609.1 Gene:elf1 / 2543082 PomBaseID:SPAC3C7.08c Length:1057 Species:Schizosaccharomyces pombe


Alignment Length:659 Identity:131/659 - (19%)
Similarity:220/659 - (33%) Gaps:226/659 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    82 AYGKKKNANQVLNNLNMTVPKGTIYGLLGASGCGKTTLLSCIVGRRYMDAGEIFVLGGKPGTRGS 146
            |||    ...:|::.|:.:.:|..||::|.:||||:|||..|        |:..|         .
pombe   453 AYG----GRLLLSHTNLHLYRGHRYGVVGHNGCGKSTLLRAI--------GDYKV---------E 496

  Fly   147 GVPGKRVGYMPQEI-------ALYGE--------FSIQETMMYFGWIFGMDTKEILERLQFLLNF 196
            ..|.      |.|:       :|.||        |..|:..:....:...:..:.|..:.|....
pombe   497 NFPS------PDEVKTCFVAHSLQGEDTSMAILDFVAQDKALLTMNVTRQEAADALHSVGFTAEM 555

  Fly   197 LDLPSEKRLVKNLSGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVHITKAGQKT 261
            .:.|     |.:||||.:.::..|.|::...::|:|||||            |||          
pombe   556 QENP-----VASLSGGWKMKLELARAMLQKADILLLDEPT------------NHL---------- 593

  Fly   262 VIITTHYIEEARQAHTIGLMRSGHLLAEESPSVLLSIYKCISLEEVFLKLSRIQSQKGDVTHVN- 325
            .:....::|             .:|.::::.:.|:..:....|:.|...:...:..|.....:. 
pombe   594 DVANIAWLE-------------AYLTSQKNITCLIVSHDSSFLDHVCTDIIHYEGVKNQAKKLGY 645

  Fly   326 FSNNISLHAMAFGSKMDKPSSSQEGGVVGLNFHQSKEVLINDSNGSIYTL---NQEPYSPPPS-- 385
            :..|:|    ||                         |.:.....|.|||   |::...|||.  
pombe   646 YQGNLS----AF-------------------------VKVKPEAKSYYTLTATNEKFVFPPPGIL 681

  Fly   386 ---RRNNNPNDEESCQDCYSNLCKITSKGKIRALLTKNMLRMWRNVGVMLFIFALPVMQVILFCL 447
               |.|..            .:.|:|:.........|..|   .||.|.|   :|.....||   
pombe   682 TGVRSNTR------------LILKMTNASYTYPNAKKKSL---DNVTVGL---SLSSRVAIL--- 725

  Fly   448 AIGRDPQGLN----LAIVNGEMNDTVRENCYWEDGCHFK--NLGCRYLS-----HLNTSVVKT-- 499
                .|.|..    :.::.||:..        ::|..||  ||...|::     ||:..:.||  
pombe   726 ----GPNGAGKSTLIKVLIGEVIP--------QEGKVFKHPNLRVGYVAQHAFHHLDQHLEKTPS 778

  Fly   500 -YY-------EDLDDAKEAVRKGTAWGAVYISENFT--------DAFIARANLGRDSDDETIDSS 548
             |.       :|.:.:::..||.|......:..:.|        :|.|.|..|.:..      ..
pombe   779 QYIQWRYAGGQDREVSEKESRKLTEEDRAQLQRDITVNGERRRVEALIGRQKLKKSF------QY 837

  Fly   549 EVKVWLDMSNQQIGVMLNRDIQL--AFRDFAMGLLGQCGSNPKLGDVPIQFRDPIYGTMNPSFTD 611
            |:| |....: :....::|:|.|  .|:.|.........|...||     ||:.|...:...|.|
pombe   838 EIK-WFGKPH-KYNTWVSREILLENGFQKFVQAFDDMESSREGLG-----FRELIPEDIRAHFED 895

  Fly   612 FVAPGVI--------------LTIVFFLAVALTSSALIIERTEGLLD-----------RSWVAGV 651
            ...||.|              :.:|....:......|:::.....||           |.|..||
pombe   896 VGLPGDIADYSPISSLSGGQKVKVVIAACLWNNPQLLVLDEPTNFLDRDALGGLAVAIRDWEGGV 960

  Fly   652 SPFEILFSH 660
                ::.||
pombe   961 ----VMISH 965

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snuNP_651628.1 LolD 73..290 CDD:224059 48/222 (22%)
ABC_DR_subfamily_A 74..286 CDD:213197 47/218 (22%)
pip_yhgE_Nterm 427..>474 CDD:276270 11/50 (22%)
ABC2_membrane_3 429..801 CDD:289468 58/288 (20%)
ABC2_membrane 601..769 CDD:279410 16/85 (19%)
elf1NP_593609.1 HEAT repeat 13..37 CDD:293787
HEAT repeat 49..85 CDD:293787
HEAT repeat 99..126 CDD:293787
ARM 137..231 CDD:237987
HEAT repeat 137..167 CDD:293787
HEAT repeat 179..209 CDD:293787
HEAT repeat 218..241 CDD:293787
Uup 445..981 CDD:223562 131/659 (20%)
ABCF_EF-3 445..635 CDD:213188 51/248 (21%)
P-loop_NTPase 696..984 CDD:304359 62/308 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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