DRSC/TRiP Functional Genomics Resources

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Protein Alignment snu and wht-5

DIOPT Version :9

Sequence 1:NP_651628.1 Gene:snu / 43391 FlyBaseID:FBgn0039594 Length:808 Species:Drosophila melanogaster
Sequence 2:NP_502352.1 Gene:wht-5 / 178182 WormBaseID:WBGene00008950 Length:695 Species:Caenorhabditis elegans


Alignment Length:870 Identity:160/870 - (18%)
Similarity:304/870 - (34%) Gaps:274/870 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 KKEATLSQQQTQQPIM--------DLERIKRHFSWSDPSAIISTDSAMAATNNDGGTQPNAVAAW 60
            :|..:.:.:.|..|::        ::|::::..:.|  |........::.||:....:..:....
 Worm    32 QKSRSPTPKPTPIPVLINDTPVASEIEQVEKELAHS--SERFRKPKTLSVTNDTESARIPSQVKT 94

  Fly    61 GAPANGPRNTQAAVSVRHAFKAYGKKKNANQ-VLNNLNMTVPKGTIYGLLGASGCGKTTLLSCIV 124
            .|.....:|.||.|.         |||...| :|..::.....|.:..::|:||.||||||:.:.
 Worm    95 NAKKLVFQNIQAVVL---------KKKGVRQEILKKIDGVARPGELTFIMGSSGAGKTTLLNILT 150

  Fly   125 GRRYMDA---GEIFVLGGKPGTRG--SGVPGKRVGYMPQEIALYGEFSIQETMMYF------GWI 178
            ||...:.   |:|.:.|     |.  |....|...|:.|:....|..:::||:.:.      ..:
 Worm   151 GRNLKNIETDGDIMING-----RNMISNEMKKLSAYVQQDDVFIGTLTVRETLRFAAKLRSPSAL 210

  Fly   179 FGMDTKEILERLQFLLNFLDLPSEK---RLVKNLSGGQQRRVSFAVALMHDPELLILDEPTVGVD 240
            ...:...|::.|..:::.....:.|   ...|:||.|:::|::||..::.||.:|..||||.|:|
 Worm   211 GATELDSIVDELLVMMSLKKCENTKVGTMTEKSLSRGERKRLAFACEILTDPPILFCDEPTSGLD 275

  Fly   241 PLLRQSIWNHLVHITKAGQKTVIITTHYIEEA--RQAHTIGLMRSGHLLAEESPSVLLSIY---- 299
            ..:...:...|..:|..| ||||.|.|....:  ..|..:.|:..|| :|...|:..:..:    
 Worm   276 SFMSHQVIKALRQLTIEG-KTVICTIHQPSTSVYHMADQLILLSQGH-VAYAGPAKQVDAFFGRC 338

  Fly   300 -----KCISLEEVFLKLSRIQSQKGDVTHVNFSNNISLHAMAFGSKMDKPSSSQEGGVVGLNFHQ 359
                 |.:|..:.|:   |:.|.|...|..:::..|                             
 Worm   339 GYPIPKFVSSPDHFM---RVISHKSFETEDDYNKRI----------------------------- 371

  Fly   360 SKEVLINDSNGSIYTLNQEPYSPPPSRRNNNPNDEESCQDCYSNLCKITSKGKIRALLTKNMLRM 424
            .|.||.:|    |....|..:|...|.|..:|   |:....:..    |...:...:..::.:::
 Worm   372 EKIVLEHD----IMKKEQSTHSTLSSSRREHP---ETAPFTFPR----TWTAQFFFIFQRSSIQL 425

  Fly   425 WRNVGVMLFIFALPVMQVILFCLAIGRDPQGLNL-----------AIVNGEMNDTV----RENCY 474
            ||...|:|    :.::|.::..:.||....||.:           |.|:.:|...:    ....:
 Worm   426 WRERSVLL----VKLIQTLIMSIMIGSTYYGLEIDKKSLPSFKGFAFVSVQMMHMLFMMPAMTVF 486

  Fly   475 WEDGCHFKNLGCRYLSHLNTSVVKTYYEDLDDAKEAVRKGTAWGAVYISENFTDAFIARANLGRD 539
            |:|               ...||:.:..::...          .|.|:::.              
 Worm   487 WKD---------------YPVVVREFQANMYSP----------SAYYLAKT-------------- 512

  Fly   540 SDDETIDSSEVKVWLDMSNQQIGVMLNRDIQLAFRDFAMGLLGQCGSNPKLGDVPIQFRDPIYGT 604
                |.||.:..|:                                        |:.|...:.| 
 Worm   513 ----TADSIQYLVF----------------------------------------PVIFSGILLG- 532

  Fly   605 MNPSFTDFVAPGVILTIVFFLAVALTSSALIIERTEGLLDRSWVAGVSPFEILFSHVITQFVVMC 669
                .|......||:|....:.:.|:.:|..:.::              |..:..|:.|      
 Worm   533 ----MTSLPYSVVIITNYLIINILLSLNACSVGQS--------------FAAMCGHLAT------ 573

  Fly   670 GQTTLVLIFM-LVVFGVTNNGDLFWVIVLTLLQGMCGMCFGFLISSVCELERNAIQLALGSFYPT 733
            |.|.|.::.: |:|||                        ||:|:         .:.....|.|.
 Worm   574 GMTVLPIVCVPLMVFG------------------------GFMIT---------YEAIPWYFLPF 605

  Fly   734 LLLSGVIWPIEGMPVVL----RYISLC--------LPLTLATSSLRSI-LTRGWAILESDVYIGY 785
            ..:|...:..|.:.:|.    ..||.|        |.:::.::....| ..:..|..|:.:::.|
 Worm   606 AWVSWYKYGFEAITIVYFNHNSTISGCESNSSVATLKMSIDSNCTTGIEFIKAQAFEETHLWLDY 670

  Fly   786 VSTLS----W-IVGFLVLTLLVLRA 805
            ...|:    | |:|.|:.|..:.||
 Worm   671 TVILAVILFWKILGALLFTWRIRRA 695

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snuNP_651628.1 LolD 73..290 CDD:224059 62/233 (27%)
ABC_DR_subfamily_A 74..286 CDD:213197 60/228 (26%)
pip_yhgE_Nterm 427..>474 CDD:276270 10/61 (16%)
ABC2_membrane_3 429..801 CDD:289468 61/405 (15%)
ABC2_membrane 601..769 CDD:279410 29/180 (16%)
wht-5NP_502352.1 3a01204 88..695 CDD:273361 150/810 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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