DRSC/TRiP Functional Genomics Resources

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Protein Alignment snu and wht-4

DIOPT Version :9

Sequence 1:NP_651628.1 Gene:snu / 43391 FlyBaseID:FBgn0039594 Length:808 Species:Drosophila melanogaster
Sequence 2:NP_494495.3 Gene:wht-4 / 173671 WormBaseID:WBGene00017179 Length:636 Species:Caenorhabditis elegans


Alignment Length:862 Identity:159/862 - (18%)
Similarity:284/862 - (32%) Gaps:330/862 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 SAIISTDSAMAATNNDGGTQPNAVAAW-GAPANGPRNTQAAVSVRHAFKAYGKKKNANQVLNNLN 97
            |.:|:.|:      .||..:.....|| |..|..|             :|.|.:|   :|:.|::
 Worm    16 STMITVDT------GDGSEKGRKTIAWSGLVATVP-------------QAGGGRK---EVIRNVS 58

  Fly    98 MTVPKGTIYGLLGASGCGKTTLLSCIVGRRYMDAGEIFVLGGKPGTRGSGVPGKRV--------- 153
            .....|.:..|:|.||.|||||::.:.   ::|...:..||...      |.||::         
 Worm    59 GVAEPGEVLALMGGSGAGKTTLMNILA---HLDTNGVEYLGDVT------VNGKKITKQKMRQMC 114

  Fly   154 GYMPQEIALYGEFSIQETMMYFGW--IFGMDTKEILERLQFLLNFLDLPS-EKRLV------KNL 209
            .|:.|.....|..:::|.:.|...  :.....::.:||::.:|..::|.. :..|:      |.:
 Worm   115 AYVQQVDLFCGTLTVREQLTYTAHMRMKNATVQQKMERVENVLRDMNLTDCQNTLIGIPNRMKGI 179

  Fly   210 SGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVHITKAGQKTVIITTHYIEEA-- 272
            |.|:::|::||..::.||::|..||||.|:|..:...:...|:.:...| ||:|:..|.....  
 Worm   180 SIGEKKRLAFACEILTDPKILFCDEPTSGLDAFMASEVVRALLDLANKG-KTIIVVLHQPSSTVF 243

  Fly   273 RQAHTIGLMRSGHLLAEESPSVLLSIYKCI--------SLEEVFLKLSRI----QSQKGDVTHVN 325
            |..|.:..|.:|..:...:...|...:..:        |.......:|.|    ::::.|||.:.
 Worm   244 RMFHKVCFMATGKTVYHGAVDRLCPFFDKLGPDFRVPESYNPADFVMSEISISPETEQEDVTRIE 308

  Fly   326 FSNNISLHAMAFGSKMDKPSSSQEGGVVGLNFHQSKEVLINDSNGSIYTLNQEPYSPPPSRRNNN 390
            :    .:|             ..:...:|....:.....:::..|         |.         
 Worm   309 Y----LIH-------------EYQNSDIGTQMLKKTRTAVDEFGG---------YG--------- 338

  Fly   391 PNDEESCQDCYSNLCKITSKGKIRALLTKNMLRMWRNVGVMLFIFALPVMQVILFCLAIGRDPQG 455
             :||:..:..|::    |...:...||.:::...:|:..::...||    |::...:.:|     
 Worm   339 -DDEDDGESRYNS----TFGTQFEILLKRSLRTTFRDPLLLRVRFA----QILATAILVG----- 389

  Fly   456 LNLAIVNGEMNDTVRENCYWEDGCHFKNLGCRYLSHLNTSVVKTYYEDLDDAKEAVRKGTAWGAV 520
                |||                                                      |   
 Worm   390 ----IVN------------------------------------------------------W--- 393

  Fly   521 YISENFTDAFIARANLGRDSDDETIDSSEVKVWLDMSNQQIGVMLN--RDIQLAFRDFAMGLLGQ 583
                        |..|    ...||.:.|            |||.|  ||:...|...::.::  
 Worm   394 ------------RVEL----KGPTIQNLE------------GVMYNCARDMTFLFYFPSVNVI-- 428

  Fly   584 CGSNPKLGDVPIQFRD---PIYGTMN----------PSFTDFVAPGVILTIVFFLAVALTSSALI 635
                  ..::|:..|:   .||....          |.:|  :.|.:..||::::|         
 Worm   429 ------TSELPVFLREHKSNIYSVEAYFLAKSLAELPQYT--ILPMIYGTIIYWMA--------- 476

  Fly   636 IERTEGLLDRSWVAGVSPFEILFSHVITQFVVMCGQTTLVLIFMLVVFGVTNNGDLFWVIVLTLL 700
                 ||     ||.|:.|                   ||.:|:.:.        |.||.|....
 Worm   477 -----GL-----VASVTSF-------------------LVFVFVCIT--------LTWVAVSIAY 504

  Fly   701 QGMC-----GMCFGFLISSVCELERNAIQLALGSFYPTLLLSGVIWPIEGMPVVLRYIS------ 754
            .|.|     |:...|:...|..:      |..|.||..         ...:||..:|:|      
 Worm   505 VGACIFGDEGLVVTFMPMFVLPM------LVFGGFYVN---------ANSIPVYYQYVSFVSWFK 554

  Fly   755 ---------------------LCLPLTLAT------SSLRSILTRGW--AILESDVYIGYVSTLS 790
                                 |..||...|      |....||||..  ..|.::|.|.::|...
 Worm   555 HGFEALEANQWKEIDKISGCDLINPLNATTTGYCPASDGPGILTRRGIDTPLYANVLILFMSFFV 619

  Fly   791 W-IVGFLVLTLLVLRAK 806
            : |:|.:.|.:.|..||
 Worm   620 YRIIGLVALKIRVRFAK 636

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snuNP_651628.1 LolD 73..290 CDD:224059 56/236 (24%)
ABC_DR_subfamily_A 74..286 CDD:213197 56/231 (24%)
pip_yhgE_Nterm 427..>474 CDD:276270 7/46 (15%)
ABC2_membrane_3 429..801 CDD:289468 72/427 (17%)
ABC2_membrane 601..769 CDD:279410 39/215 (18%)
wht-4NP_494495.3 3a01204 49..636 CDD:273361 145/808 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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