DRSC/TRiP Functional Genomics Resources

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Protein Alignment snu and Abca4

DIOPT Version :9

Sequence 1:NP_651628.1 Gene:snu / 43391 FlyBaseID:FBgn0039594 Length:808 Species:Drosophila melanogaster
Sequence 2:NP_031404.1 Gene:Abca4 / 11304 MGIID:109424 Length:2310 Species:Mus musculus


Alignment Length:310 Identity:84/310 - (27%)
Similarity:155/310 - (50%) Gaps:25/310 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    74 VSVRHAFKAYGKKKNANQVLNNLNMTVPKGTIYGLLGASGCGKTTLLSCIVGRRYMDAGEIFVLG 138
            |.|::..|.:  :.:....::.||:|..:..|...||.:|.||||.||.:.|.....:|.: ::|
Mouse   929 VCVKNLVKVF--EPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTV-LIG 990

  Fly   139 GKPGTRGSGVPGKRVGYMPQEIALYGEFSIQETMMYFGWIFGMDTKEILERLQFLLNFLDLPSEK 203
            ||.......|..:.:|..||...|:...::.|.::::..:.|...:|....::.:|....|..::
Mouse   991 GKDIETNLDVVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKR 1055

  Fly   204 -RLVKNLSGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVHITKAGQKTVIITTH 267
             ...::||||.||::|.|:|.:.|.::::|||||.||||..|:|||:.|:.. ::| :|:|::||
Mouse  1056 NEEAQDLSGGMQRKLSVAIAFVGDSKVVVLDEPTSGVDPYSRRSIWDLLLKY-RSG-RTIIMSTH 1118

  Fly   268 YIEEA-RQAHTIGLMRSGHLLAEESPSVLLSIYKCISLEEVFLKLSRIQSQKG------DVTHVN 325
            :::|| .....|.::..|.|....:|..|.:.:.......:..|:..||||:|      ..|...
Mouse  1119 HMDEADLLGDRIAIISQGRLYCSGTPLFLKNCFGTGFYLTLVRKMKNIQSQRGGCEGVCSCTSKG 1183

  Fly   326 FSNNISLHAMAFGSKMDKPSSSQ--EGGV---VGLNFHQSKEVLINDSNG 370
            ||....       :::|:.:..|  :|.|   :.|.:|...|..:.:..|
Mouse  1184 FSTRCP-------TRVDEITEEQVLDGDVQELMDLVYHHVPEAKLVECIG 1226

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snuNP_651628.1 LolD 73..290 CDD:224059 65/217 (30%)
ABC_DR_subfamily_A 74..286 CDD:213197 64/213 (30%)
pip_yhgE_Nterm 427..>474 CDD:276270
ABC2_membrane_3 429..801 CDD:289468
ABC2_membrane 601..769 CDD:279410
Abca4NP_031404.1 rim_protein 1..2271 CDD:130324 84/310 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 891..910
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1311..1344
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2266..2310
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0059
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

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