DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sid and cps-6

DIOPT Version :9

Sequence 1:NP_651627.1 Gene:Sid / 43390 FlyBaseID:FBgn0039593 Length:370 Species:Drosophila melanogaster
Sequence 2:NP_491371.1 Gene:cps-6 / 172045 WormBaseID:WBGene00000787 Length:308 Species:Caenorhabditis elegans


Alignment Length:317 Identity:63/317 - (19%)
Similarity:111/317 - (35%) Gaps:73/317 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 LSSAACAPPDPVVVKVPDTSCSIPSATFAVGFSFNGRFMELYRNCFDGYS---------LAFQHS 139
            :.||...|.:.:.|..|.|.........|:|.|   |..|:.::.:.|::         |::.:.
 Worm    32 VQSATNVPMNQIQVSEPMTVKPASLNADAMGPS---RSAEIMKHGYPGFTNVRTYEDFVLSYDYK 93

  Fly   140 IYKAY-----------RYVNTVPR------PNPTWQSDQLSGGFDNAYEGRATQACLLTNLGAVQ 187
            ...|:           ::...|.|      |:.|:....||...|....|               
 Worm    94 TRTAHWVCEHLTPERLKHAEGVDRKLCEFKPDITFPQKFLSQNTDYKCSG--------------- 143

  Fly   188 PQCKFDRGHMTPASAFISTELK-KSTFRYLNAIPQY-RGVNRGKWKAVETWVNNMVRGLYDNPII 250
                |||||:..|.....::|. ..||...|..||. ||.||.||..:|.....:.:.:.::.||
 Worm   144 ----FDRGHLAAAGNHRKSQLAVDQTFYLSNMSPQVGRGFNRDKWNDLEMHCRRVAKKMINSYII 204

  Fly   251 NNVQIPRTYDVLKVCIGALGVHRLRHNTNNNMIPIYLLDNNKIPVPEWMYKI-VSHLSGDKWVML 314
            .               |.|.:.:| .......|...::.:|.:.||...:|: :..::..|:.:.
 Worm   205 T---------------GPLYLPKL-EGDGKKYIKYQVIGDNNVAVPTHFFKVALFEVTPGKFELE 253

  Fly   315 TYNDVSLPNQQALNQICHVIPCHPGLNLNTKDVGHTVCC--DPYRFITINAPHLTGV 369
            :|   .||| ..:.....:...|..|:...:..|..:..  ||...:..|.....|:
 Worm   254 SY---ILPN-AVIEDTVEISKFHVPLDAVERSAGLEIFARLDPKSIVKENGAKKGGL 306

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SidNP_651627.1 Endonuclease_NS 106..358 CDD:279553 55/282 (20%)
cps-6NP_491371.1 NUC1 10..308 CDD:224777 63/317 (20%)
NUC 83..293 CDD:214683 48/248 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D933605at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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