DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb98DE and NAM8

DIOPT Version :10

Sequence 1:NP_524543.1 Gene:Hrb98DE / 43385 FlyBaseID:FBgn0001215 Length:365 Species:Drosophila melanogaster
Sequence 2:NP_011954.1 Gene:NAM8 / 856486 SGDID:S000001128 Length:523 Species:Saccharomyces cerevisiae


Alignment Length:255 Identity:57/255 - (22%)
Similarity:102/255 - (40%) Gaps:53/255 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 KLFIGGLDYRTTDENL---------KAHFE---KWGNIVDVVVMKDPRTKRSRGFGFITYSHSSM 84
            :|::|.|| .|.|:|.         :|:..   .|.|.::.........|.::|:.|:.:..|:.
Yeast    55 QLYMGDLD-PTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGPKNNQGYCFVDFPSSTH 118

  Fly    85 IDEAQKSRPHKIDGRVVEPKRAVPRQDI----------DSPNAGATVK-----KLFVGALKDDHD 134
            ...|...     :|.:: |.  .|.:.:          :|.|:...||     .:|||.|..:..
Yeast   119 AANALLK-----NGMLI-PN--FPNKKLKLNWATSSYSNSNNSLNNVKSGNNCSIFVGDLAPNVT 175

  Fly   135 EQSIRDYF-QHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQ-LNGKMVDVKKA 197
            |..:.:.| ..:.:.....||.|:.||..:|:.||:|.:.|.....:.:.|.. |||:.:   |.
Yeast   176 ESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRAI---KV 237

  Fly   198 LPKQNDQQGGGGGRGGPGGRAGGNRGNMGGGNYGNQNGGGNWNNGGNNWGNNRGGNDNWG 257
            .|....||          ..:|.|..|....:..|:|....:.:.|.::.:|  ||:|.|
Yeast   238 GPTSGQQQ----------HVSGNNDYNRSSSSLNNENVDSRFLSKGQSFLSN--GNNNMG 285

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb98DENP_524543.1 RRM1_hnRNPA_like 32..109 CDD:409992 17/88 (19%)
RRM_SF 123..195 CDD:473069 20/73 (27%)
NAM8NP_011954.1 RRM1_NGR1_NAM8_like 55..144 CDD:410023 18/97 (19%)
RRM2_SECp43_like 162..241 CDD:409781 22/81 (27%)
RRM3_NGR1_NAM8_like 312..383 CDD:409782
Blue background indicates that the domain is not in the aligned region.

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