DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb98DE and SBP1

DIOPT Version :10

Sequence 1:NP_524543.1 Gene:Hrb98DE / 43385 FlyBaseID:FBgn0001215 Length:365 Species:Drosophila melanogaster
Sequence 2:NP_011829.1 Gene:SBP1 / 856351 SGDID:S000001026 Length:294 Species:Saccharomyces cerevisiae


Alignment Length:207 Identity:55/207 - (26%)
Similarity:84/207 - (40%) Gaps:53/207 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    82 SSMIDEAQKSRPH-KIDGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYF-QH 144
            |:.|:||..:..: .|:....:|:....:..||..:.      :|:|.:..:..|..::..| :.
Yeast     2 SAEIEEATNAVNNLSINDSEQQPRAPTHKTVIDPEDT------IFIGNVAHECTEDDLKQLFVEE 60

  Fly   145 FGNIVDINIVIDKET-----GKKRGFAFVEFD---DYDPV-----DKVVLQKQHQLNGKMVDVKK 196
            ||:.|.:.|.|.:.|     ..|.  |.|:|.   |:|.:     .|||..::       :.:|:
Yeast    61 FGDEVSVEIPIKEHTDGHIPASKH--ALVKFPTKIDFDNIKENYDTKVVKDRE-------IHIKR 116

  Fly   197 ALPKQNDQQGGGGGRGGPGGRAGGNRGNMGGGNYGNQNGGGNWNNGGNNWGNNRGGNDNWGNNSF 261
            |......|:||..||||..|| ||.||...||..|...|.||                      |
Yeast   117 ARTPGQMQRGGFRGRGGFRGR-GGFRGGFRGGYRGGFRGRGN----------------------F 158

  Fly   262 GGGGGGGGGYGG 273
            .|.||..||:.|
Yeast   159 RGRGGARGGFNG 170

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb98DENP_524543.1 RRM1_hnRNPA_like 32..109 CDD:409992 6/27 (22%)
RRM_SF 123..195 CDD:473069 19/85 (22%)
SBP1NP_011829.1 RRM_1 39..113 CDD:425453 19/82 (23%)
RRM 187..269 CDD:214636
Blue background indicates that the domain is not in the aligned region.

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