DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb98DE and AT5G51730

DIOPT Version :9

Sequence 1:NP_524543.1 Gene:Hrb98DE / 43385 FlyBaseID:FBgn0001215 Length:365 Species:Drosophila melanogaster
Sequence 2:NP_199986.2 Gene:AT5G51730 / 835247 AraportID:AT5G51730 Length:317 Species:Arabidopsis thaliana


Alignment Length:169 Identity:35/169 - (20%)
Similarity:52/169 - (30%) Gaps:65/169 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   101 VEPKR------AVPRQD-------IDSPNAGATVKKLFVGALKDDHD------------------ 134
            |.||:      |..::|       :||........|..|.:||...|                  
plant    26 VNPKKKIICLIASIKEDVSSIKVVVDSLKEDVASLKATVNSLKSTFDLLSTKKDSLAIFTSFKET 90

  Fly   135 -------EQSIRDYFQHFGNIVDINI------------VIDKETGKKRGFAFVEFDDYDPVDKVV 180
                   :..:|...|:..:..|:.|            ..|..|.||.....|...:.|.|.|..
plant    91 ARIPASVKNIVRPVIQNSASSEDLKISDQGEEPAHKKAKTDTNTCKKESSRNVSSKESDVVKKET 155

  Fly   181 LQK-----QHQLNGKMVDV-KKAL--PKQNDQQGGGGGR 211
            |::     ..:...|..:| ::||  |||       |||
plant   156 LERTLPTYSFKNLTKTAEVGERALFIPKQ-------GGR 187

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb98DENP_524543.1 RRM1_hnRNPA_like 32..109 CDD:241022 4/13 (31%)
RRM_SF 123..195 CDD:302621 20/114 (18%)
AT5G51730NP_199986.2 RRM_SF 192..268 CDD:388407
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1202220at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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