DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb98DE and AT4G14300

DIOPT Version :9

Sequence 1:NP_524543.1 Gene:Hrb98DE / 43385 FlyBaseID:FBgn0001215 Length:365 Species:Drosophila melanogaster
Sequence 2:NP_001328758.1 Gene:AT4G14300 / 827071 AraportID:AT4G14300 Length:411 Species:Arabidopsis thaliana


Alignment Length:419 Identity:135/419 - (32%)
Similarity:194/419 - (46%) Gaps:111/419 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 KLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKSRPHKI 96
            |||:||:.:.|.::.|:.||..:|.:...:||:|..|.|.|||||:.:|..|::|...:.: |.|
plant     7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQEK-HSI 70

  Fly    97 DGRVVEPKRAVPRQDID----------SPNAGA----TVKKLFVGALKDDHDEQSIRDYFQHFGN 147
            |.|.|:.|||:.|::..          |.::|.    ..||:|||.|.....::..|.||:.:|.
plant    71 DTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGP 135

  Fly   148 IVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDVKKALPKQNDQQGGGGGRG 212
            :.|:.|:.|:.|.:.|||.||.||..|.||.|:.:..|.|:||.|:||:||||  |...|||||.
plant   136 VTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPK--DANPGGGGRS 198

  Fly   213 GPGGRAGGNRGNMGGGNYGNQNGGGNWN---------NG---------GNNWGNNRGGNDNWGNN 259
            ..||.:||.:|.  |||..:.:|..:.|         ||         |..:||   |::..|..
plant   199 MGGGGSGGYQGY--GGNESSYDGRMDSNRFLQHQSVGNGLPSYGSSGYGAGYGN---GSNGAGYG 258

  Fly   260 SFGGGGGGGGGYGGG-----------------------NNSWGNNNPWDNGNGGGNFGGGG---- 297
            ::||..|..||||.|                       .|||  :.|..:|.|...:|.|.    
plant   259 AYGGYTGSAGGYGAGATAGYGATNIPGAGYGSSTGVAPRNSW--DTPASSGYGNPGYGSGAAHSG 321

  Fly   298 -------------NNWNNGGNDFGGY---------QQNYG--GGPQRGGGNFNNNRMQPYQGGGG 338
                         :.::|.|..:|||         |..||  ||...|||:.|       .|.||
plant   322 YGVPGAAPPTQSPSGYSNQGYGYGGYSGSDSGYGNQAAYGVVGGRPSGGGSNN-------PGSGG 379

  Fly   339 FKAGGGNQGN--------YGGNNQGFNNG 359
            :..||...|:        |||   |:|:|
plant   380 YMGGGYGDGSWRSDPSQGYGG---GYNDG 405

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb98DENP_524543.1 RRM1_hnRNPA_like 32..109 CDD:241022 31/76 (41%)
RRM_SF 123..195 CDD:302621 29/71 (41%)
AT4G14300NP_001328758.1 RRM1_hnRNPA_hnRNPD_like 8..78 CDD:409763 27/70 (39%)
RRM2_Hrp1p 111..188 CDD:409767 33/76 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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