DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb98DE and UBA2A

DIOPT Version :9

Sequence 1:NP_524543.1 Gene:Hrb98DE / 43385 FlyBaseID:FBgn0001215 Length:365 Species:Drosophila melanogaster
Sequence 2:NP_001190109.1 Gene:UBA2A / 824853 AraportID:AT3G56860 Length:478 Species:Arabidopsis thaliana


Alignment Length:425 Identity:98/425 - (23%)
Similarity:143/425 - (33%) Gaps:121/425 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 NGNSNGHDDD----------FPQDSI-----------------------TEPEHMRKLFIGGLDY 40
            :|:.|..|||          |.::.:                       .:|.| ||:|:.||.:
plant    86 SGSGNQEDDDDEPIQDLLEPFSKEQVLSLLKEAAEKHVDVANRIREVADEDPVH-RKIFVHGLGW 149

  Fly    41 RTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKSRPHKIDGRVVEPKR 105
            .|..|.|...|:::|.|.|...:.|..:.:|:|:|||.|...|....|.|....||..|:...:.
plant   150 DTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRMTACQL 214

  Fly   106 A----------VPRQDIDSP----NAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVID 156
            |          :....:.:|    |:..|.||::|..:..:.|.|.:..:|..||.|.:..:.:|
plant   215 ASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLD 279

  Fly   157 KETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDVKKAL--PKQNDQQ-------------- 205
            |.||:.:||....:...:...:.:.:......|.::..:||:  ||...||              
plant   280 KYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKAIDGPKPGKQQQHHHNPHAYNNPRY 344

  Fly   206 --GGGGGRGGPGGRA---GGNRGNMGGGN---------------YGNQNGGGNWNNGGNNWGNNR 250
              ....|.|.|||..   .||...|||..               ..:|..|..:|..        
plant   345 QRNDNNGYGPPGGHGHLMAGNPAGMGGPTAQVINPAIGQALTALLASQGAGLAFNPA-------- 401

  Fly   251 GGNDNWGNNSFGGGGGGGGGYGGGNNSWGNNNPWDNGNGGGNFGGGGNNWNNGGNDFGGYQQNYG 315
                 .|....|..|...|           .||   |||.|...|.|......|.     ...||
plant   402 -----IGQALLGSLGTAAG-----------VNP---GNGVGMPTGYGTQAMAPGT-----MPGYG 442

  Fly   316 GGPQRGGGNFNNNRMQPYQGGGGFKAGGGNQGNYG 350
            ..|...||     ...|..|.||...|....|.||
plant   443 TQPGLQGG-----YQTPQPGQGGTSRGQHGVGPYG 472

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb98DENP_524543.1 RRM1_hnRNPA_like 32..109 CDD:241022 25/86 (29%)
RRM_SF 123..195 CDD:302621 15/71 (21%)
UBA2ANP_001190109.1 PABP-1234 136..>347 CDD:130689 53/211 (25%)
RRM_SF 140..215 CDD:418427 25/74 (34%)
Med15 361..>465 CDD:312941 30/140 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1202220at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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