DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb98DE and PHIP1

DIOPT Version :9

Sequence 1:NP_524543.1 Gene:Hrb98DE / 43385 FlyBaseID:FBgn0001215 Length:365 Species:Drosophila melanogaster
Sequence 2:NP_191094.1 Gene:PHIP1 / 824700 AraportID:AT3G55340 Length:597 Species:Arabidopsis thaliana


Alignment Length:241 Identity:59/241 - (24%)
Similarity:99/241 - (41%) Gaps:36/241 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 DDFPQDSITEPEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSH 81
            |:..:|.:..    .||::||:.|::|::.::::|...|.|:.|.....|......|..|||:..
plant   151 DNKEEDGVVP----NKLYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMRPEDGAFSGIAFITFDT 211

  Fly    82 SSMIDEAQKS----------RPHKIDGRVVEPKRAVPRQDIDSPNAGATV---KKLFVGALKDDH 133
            .   |.|:::          |...|...|.....::||:...|..|...|   .::::|.|..|.
plant   212 E---DGAKRALAFDRAAMGDRYLTIQQYVKTTTPSIPRRKTSSGFAPEMVDGYNRVYIGNLAWDT 273

  Fly   134 DEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDVKKAL 198
            .|:.||..|... .|..:.:..:||||:.:|:|.|:|.|...|...:...|..:.|:.|.:..||
plant   274 TERDIRKLFSDC-VINSVRLGKNKETGEFKGYAHVDFKDSVSVAIALKLDQQVICGRPVKICCAL 337

  Fly   199 ---PKQNDQQGGGGGRGG-----------PGGRAGGNRGNMGGGNY 230
               |..:...|.....|.           |.....| |..:..|||
plant   338 KDRPATDHTPGETNNAGSYNMEDTYAAADPVPALAG-RSEVDDGNY 382

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb98DENP_524543.1 RRM1_hnRNPA_like 32..109 CDD:241022 20/86 (23%)
RRM_SF 123..195 CDD:302621 21/71 (30%)
PHIP1NP_191094.1 RRM <129..327 CDD:223796 46/183 (25%)
RRM1_PHIP1 163..234 CDD:240717 17/73 (23%)
RRM2_PHIP1 263..334 CDD:240718 21/71 (30%)
PTZ00368 393..592 CDD:173561
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1202220at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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