DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb98DE and AT3G15010

DIOPT Version :9

Sequence 1:NP_524543.1 Gene:Hrb98DE / 43385 FlyBaseID:FBgn0001215 Length:365 Species:Drosophila melanogaster
Sequence 2:NP_188119.1 Gene:AT3G15010 / 820730 AraportID:AT3G15010 Length:404 Species:Arabidopsis thaliana


Alignment Length:362 Identity:113/362 - (31%)
Similarity:154/362 - (42%) Gaps:89/362 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 DDDFPQDSITEPEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYS 80
            |.|..|         |||||.||...||.|.|::.|..:|::.:.:|:.|..|.:|:|:||:|:.
plant    69 DSDISQ---------RKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFM 124

  Fly    81 HSSMIDEAQKSRPHKIDGRV-VEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQH 144
            |......|.|....|||||| |....|...|...|..|..:::|::|..:..|.....:.::|..
plant   125 HVDGALLALKEPSKKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPADRLLNHFMA 189

  Fly   145 FGNIVDINIVIDKETGKKRGFAFVEFDD--------YDPVDKVVLQKQHQLNGKM-VDVKK-ALP 199
            :|::.:..:..||.|||.||||...:..        .|||.  |:..:| ||.|: ||.|| ..|
plant   190 YGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVK--VIDGKH-LNCKLAVDGKKGGKP 251

  Fly   200 KQNDQQGGGGGRG-------------GPGGRAGGNRGNMGGGNYGNQNGGGNWNNGGNNWGNNRG 251
            .....|.||.|.|             ||.|.|||...      ||..:||...::          
plant   252 GMPQAQDGGSGHGHVHGEGMGMVRPAGPYGAAGGISA------YGGYSGGPPAHH---------- 300

  Fly   252 GNDNWGNNSFGGGGGGGGGYGGGNNSWGNNNPWDNGNGG-GNFGGGGNNWNNGGNDFGGYQQNYG 315
                 .|::....|.|..||||....:|       |.|| |.:||.|          |||     
plant   301 -----MNSTHSSMGVGSAGYGGHYGGYG-------GPGGTGVYGGLG----------GGY----- 338

  Fly   316 GGPQRGGGNFNNNRMQP--YQGGGGFKAGGGNQGNYG 350
            |||..|.|.:   ||.|  ..||||:.    ..|:||
plant   339 GGPGTGSGQY---RMPPSSMPGGGGYP----ESGHYG 368

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb98DENP_524543.1 RRM1_hnRNPA_like 32..109 CDD:241022 31/77 (40%)
RRM_SF 123..195 CDD:302621 24/80 (30%)
AT3G15010NP_188119.1 RRM_SF 75..150 CDD:418427 31/74 (42%)
RRM2_NsCP33_like 168..242 CDD:410187 22/76 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1202220at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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