DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb98DE and AT2G33410

DIOPT Version :9

Sequence 1:NP_524543.1 Gene:Hrb98DE / 43385 FlyBaseID:FBgn0001215 Length:365 Species:Drosophila melanogaster
Sequence 2:NP_180899.1 Gene:AT2G33410 / 817905 AraportID:AT2G33410 Length:404 Species:Arabidopsis thaliana


Alignment Length:406 Identity:144/406 - (35%)
Similarity:191/406 - (47%) Gaps:85/406 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 KLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKSRPHKI 96
            ||||||:.:.|.:..|:.:|..:|.::.|.||::..|.|.|||||:.:|..::||...:.: |.|
plant     7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQDK-HHI 70

  Fly    97 DGRVVEPKRAVPRQDIDSP-------------NAGATV--KKLFVGALKDDHDEQSIRDYFQHFG 146
            |.|.|:.|||:.|:: .||             ::||.|  ||:|||.|.........|.||:.:|
plant    71 DNRDVDVKRAMSREE-QSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTSDEFRAYFETYG 134

  Fly   147 NIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDVKKALPKQND---QQGGG 208
            .:.|..|:||:.|.:.|||.||.||..|.||.|:.:..|.||||.|:||:||||..:   ..|||
plant   135 PVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEVKRALPKDANPGIASGGG 199

  Fly   209 GGRGGPGGRAGGNRGNMGGGNYGN----------QN-GGGNWNNGGNNWGNNRG-GNDNWGNNSF 261
            .|.||.||..|  .|..||..|..          || |.|....||:.:|...| |::..|...|
plant   200 RGSGGAGGFPG--YGGSGGSGYEGRVDSNRYMQPQNTGSGYPPYGGSGYGTGYGYGSNGVGYGGF 262

  Fly   262 GGGGG-----------GGGGYGGG-NNSW-------------GNNNPWDN---------GNGGGN 292
            ||.|.           .|.|:|.| .:||             ||..||..         |..|.:
plant   263 GGYGNPAGAPYGNPSVPGAGFGSGPRSSWGAQAPSGYGNVGYGNAAPWGGSGGPGSAVMGQAGAS 327

  Fly   293 FGGGGNNWNNGGNDFG-GYQQNYG--GGPQRGGGNFNNNRMQPYQGGGGFK---AGGGNQGNYGG 351
            .|.|...:..||||.. |....||  ||   ..||..||     .||||:.   .|.|..||:.|
plant   328 AGYGSQGYGYGGNDSSYGTPSAYGAVGG---RSGNMPNN-----HGGGGYADALDGSGGYGNHQG 384

  Fly   352 NN--QGFNNG-GNNRR 364
            ||  .|:..| |:.|:
plant   385 NNGQAGYGGGYGSGRQ 400

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb98DENP_524543.1 RRM1_hnRNPA_like 32..109 CDD:241022 31/76 (41%)
RRM_SF 123..195 CDD:302621 31/71 (44%)
AT2G33410NP_180899.1 RRM_SF 8..78 CDD:418427 27/70 (39%)
RRM2_Hrp1p 111..188 CDD:409767 35/76 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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