DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb98DE and AT2G22100

DIOPT Version :9

Sequence 1:NP_524543.1 Gene:Hrb98DE / 43385 FlyBaseID:FBgn0001215 Length:365 Species:Drosophila melanogaster
Sequence 2:NP_565526.1 Gene:AT2G22100 / 816745 AraportID:AT2G22100 Length:382 Species:Arabidopsis thaliana


Alignment Length:285 Identity:69/285 - (24%)
Similarity:98/285 - (34%) Gaps:87/285 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 DSITEPEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMID 86
            :|.......|.:|:.||.:.||.|||||.||.:|.|.:..|:.|..|.|::||||:.:.......
plant   154 ESADRDSSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGAR 218

  Fly    87 EAQKSRPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDI 151
            .|.|:...::..|.|.   .:|.:..:|                                     
plant   219 AALKNPEKRMYNRTVS---CLPARPFNS------------------------------------- 243

  Fly   152 NIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLN-GKM----VDVKKALPKQNDQQGG---- 207
                    ||.|       :...||:.|.:...|..| .:|    :|:...|.|.:.||..    
plant   244 --------GKPR-------EQQQPVESVKIDLSHTGNQSEMALPGIDLGHGLDKGHQQQQNMSMY 293

  Fly   208 --------GGGRGGPG-----GRAGGNRGNMGGGNYGNQNGGGNWNNGGNNWGNNRG------GN 253
                    |..:..||     |...||....|..|| ...|.|..|.|.....|:.|      |:
plant   294 AGQNMPFYGHSQPPPGFNPMYGAMMGNPMVAGLQNY-RMFGSGMMNQGPMMPPNHMGMVGQYVGD 357

  Fly   254 DNWGNNSFGGGGGGGGGYGGGNNSW 278
            .|  .|..|.|.|.|.|: .|..:|
plant   358 GN--VNGVGAGAGAGAGF-DGERAW 379

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb98DENP_524543.1 RRM1_hnRNPA_like 32..109 CDD:241022 26/76 (34%)
RRM_SF 123..195 CDD:302621 10/76 (13%)
AT2G22100NP_565526.1 PABP-1234 <164..>353 CDD:130689 57/244 (23%)
RRM_SF 165..235 CDD:418427 26/72 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1202220at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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