DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb98DE and UBA1A

DIOPT Version :9

Sequence 1:NP_524543.1 Gene:Hrb98DE / 43385 FlyBaseID:FBgn0001215 Length:365 Species:Drosophila melanogaster
Sequence 2:NP_850021.1 Gene:UBA1A / 816744 AraportID:AT2G22090 Length:347 Species:Arabidopsis thaliana


Alignment Length:376 Identity:88/376 - (23%)
Similarity:137/376 - (36%) Gaps:123/376 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 VNSNQNQ--------NGNSNGHDDDFPQDSITEPEHMRKLFIGGLDYRTTDENLKAHFEKWGNIV 58
            :|..|.|        :.:|:....|...|:..:||.:|:|    |...:.|:           :|
plant    27 INKQQQQPESSTPYSSSSSSSDSSDSESDNEFDPEELREL----LQPYSKDQ-----------LV 76

  Fly    59 DVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKSRPHKIDGRVVEPKRAVPRQDIDSPNAGATVKK 123
            |:|      ...|| .|...|  |::::.|.:...|                           :|
plant    77 DLV------CSASR-IGSSIY--SAVVEAADRDVTH---------------------------RK 105

  Fly   124 LFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQ-KQHQL 187
            :||..|..:...:::...|:.:|.|.:..:||||.|||.:||.||.|.......:.:.: |:..|
plant   106 IFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRIL 170

  Fly   188 N---------------GKMVD----VKKAL--------PKQNDQQG-----GGGGRGGP---GGR 217
            |               ||..|    ||.::        |:|...||     |||....|   |.:
plant   171 NRTATCQLASMGPAASGKGHDQPGPVKISMGSMANHGQPQQQQVQGQHVFNGGGMAASPFMLGNQ 235

  Fly   218 -----AGGNRGN-------MGGGNYGNQNGGGNWNNGGNNWGNNRGGNDNWGNNSFGGGG----- 265
                 ..|..||       ..||.|......|...:||.       |:|...::..||.|     
plant   236 YHPLYGAGMLGNPALAAAAAAGGGYMYPMLAGALAHGGL-------GSDMVQSSQMGGIGVDPSV 293

  Fly   266 GGGGGYGGGNNSWGNNNP--WDNGNGGGNFGGGGNNWNNGGNDFGGYQQNY 314
            |..|....|:...|.:.|  :.:.:.||..|.|.:: :.||:.|.|| .||
plant   294 GAAGLSALGSYFRGQSLPSTYPDSDAGGKRGTGKDS-DAGGSSFHGY-SNY 342

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb98DENP_524543.1 RRM1_hnRNPA_like 32..109 CDD:241022 13/76 (17%)
RRM_SF 123..195 CDD:302621 25/91 (27%)
UBA1ANP_850021.1 RRM_SF 104..179 CDD:418427 22/74 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1202220at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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