DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb98DE and hnrnpd

DIOPT Version :9

Sequence 1:NP_524543.1 Gene:Hrb98DE / 43385 FlyBaseID:FBgn0001215 Length:365 Species:Drosophila melanogaster
Sequence 2:NP_001025523.1 Gene:hnrnpd / 594903 XenbaseID:XB-GENE-988375 Length:295 Species:Xenopus tropicalis


Alignment Length:326 Identity:108/326 - (33%)
Similarity:159/326 - (48%) Gaps:57/326 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 GHDDDFPQDSITEPEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFIT 78
            |.::....|:....|...|:|||||.:.||.::||.:|.|:|.:||..:..||.|.|||||||:.
 Frog    21 GQNEGVKIDASKTEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVL 85

  Fly    79 YSHSSMIDEAQKSRPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQ 143
            :..|..:|:..:.:.||::|:|::||||      .:......|||:|||.|..|..|:.||:||.
 Frog    86 FKESEGVDKVMEQKEHKLNGKVIDPKRA------KAMKTKEPVKKIFVGGLSPDTPEEKIREYFG 144

  Fly   144 HFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDVKKALPKQNDQQ--- 205
            .||.|..|.:.:|.:|.|:|||.|:.|.:.|||.|::.:|.|.:.....::|.||.|:..||   
 Frog   145 TFGEIEAIELPMDNKTNKRRGFCFITFKEEDPVKKIMEKKYHNVGLSKCEIKVALSKEQYQQQQQ 209

  Fly   206 ---GGGGGRGGPGGRAGGNRGNMGGGNYGNQNGGGNWNNGGNNWGNNRGGNDNWGNNSFGGGGGG 267
               .|||....|.||.|.::               .|:.|.:|:         | |.|:...|..
 Frog   210 WGTRGGGSSSRPRGRGGVSQ---------------TWSQGYSNY---------W-NPSYSSYGYN 249

  Fly   268 GGGYGGGNNSWGNNNPWDNGNGGGNFGGGGNNWNNGGNDFGGYQQNYGGGPQRGGGNFNNNRMQP 332
            ..|||                |.||:...|.|: .|..|:...|..||...:|||   :.|..:|
 Frog   250 NQGYG----------------GYGNYDYSGYNY-YGYGDYSNQQSGYGKTARRGG---HQNSYKP 294

  Fly   333 Y 333
            |
 Frog   295 Y 295

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb98DENP_524543.1 RRM1_hnRNPA_like 32..109 CDD:241022 35/76 (46%)
RRM_SF 123..195 CDD:302621 29/71 (41%)
hnrnpdNP_001025523.1 RRM1_hnRNPD 40..113 CDD:241200 32/72 (44%)
RRM2_hnRNPD 124..198 CDD:241027 30/73 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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