DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb98DE and hnrnpa2b1

DIOPT Version :9

Sequence 1:NP_524543.1 Gene:Hrb98DE / 43385 FlyBaseID:FBgn0001215 Length:365 Species:Drosophila melanogaster
Sequence 2:NP_001192271.1 Gene:hnrnpa2b1 / 549680 XenbaseID:XB-GENE-490993 Length:350 Species:Xenopus tropicalis


Alignment Length:370 Identity:176/370 - (47%)
Similarity:224/370 - (60%) Gaps:56/370 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 EPEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQK 90
            |.|..||||||||.:.||:::|:.::|:||.:.|.|||:||.:||||||||:|:|....:|.:..
 Frog     4 EKEQFRKLFIGGLSFETTEDSLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMDEVDASMA 68

  Fly    91 SRPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVI 155
            :|||.||||||||||||.|::...|.|..||||||||.:|:|.:|..:|:||:.:|.|..|.|:.
 Frog    69 ARPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIESIEIIT 133

  Fly   156 DKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDVKKALPKQ------------------N 202
            ||::||||||.||.|||:|||||:||||.|.:||...:|:|||.||                  .
 Frog   134 DKQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSKQEMQDVQNTRNSRGGNFGFG 198

  Fly   203 DQQGGGGGRGGPGGRAGGNRGNMGGG--------NYGNQNGGGNWNNGGNNWGNNR---GGNDNW 256
            |.:|||....||||...|:....|||        .||....||:: .||..:|..|   ||:..:
 Frog   199 DSRGGGNFGSGPGGNFRGSSDGYGGGRGYGDGYNGYGGGQSGGSF-GGGPGYGGGRGGYGGSPGY 262

  Fly   257 GNNSFGGGGGGGGGYGGGNNSWGNNNPWDNGNGGGNFGGGGNNWNNGGNDFGGY-QQNYGGGPQR 320
            ||.   ||||||||||||         :|| .||||:||||:.     ||||.| ||:...||.:
 Frog   263 GNQ---GGGGGGGGYGGG---------YDN-YGGGNYGGGGSY-----NDFGNYNQQSSSYGPMK 309

  Fly   321 GGGNFNNNRMQ--PYQGGGGFKAGGGNQGNYGGNNQGFNNGGNNR 363
            .||||..||..  || |||.:..|.|:.|..||.  |:  ||.||
 Frog   310 SGGNFGGNRSMGGPY-GGGNYGPGSGSGGGSGGG--GY--GGRNR 349

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb98DENP_524543.1 RRM1_hnRNPA_like 32..109 CDD:241022 45/76 (59%)
RRM_SF 123..195 CDD:302621 40/71 (56%)
hnrnpa2b1NP_001192271.1 RRM1_hnRNPA2B1 7..87 CDD:241206 46/79 (58%)
RRM2_hnRNPA2B1 100..179 CDD:241025 45/78 (58%)
HnRNPA1 294..319 CDD:288479 13/24 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 102 1.000 Domainoid score I6748
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 353 1.000 Inparanoid score I2204
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1202220at2759
OrthoFinder 1 1.000 - - FOG0000779
OrthoInspector 1 1.000 - - mtm9408
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X431
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
77.060

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