DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb98DE and tra2b

DIOPT Version :9

Sequence 1:NP_524543.1 Gene:Hrb98DE / 43385 FlyBaseID:FBgn0001215 Length:365 Species:Drosophila melanogaster
Sequence 2:NP_001006878.1 Gene:tra2b / 448667 XenbaseID:XB-GENE-5864557 Length:293 Species:Xenopus tropicalis


Alignment Length:219 Identity:56/219 - (25%)
Similarity:95/219 - (43%) Gaps:56/219 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 KDPRTKRSRGFGFITYSHSSMIDEAQKSRPHKIDGRVVEPKRAVPRQDIDSPNA--GATVKKLFV 126
            :|.|.:||       :|||.|...                :|.|..:....||.  |.....|:.
 Frog    92 RDYRRRRS-------HSHSPMSTR----------------RRHVGNRANPDPNCCLGVFGLSLYT 133

  Fly   127 GALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQH--QLNG 189
                   .|:.:|:.|..:|.|.|::||.|:::.:.|||:||.|::.|.. |...::.:  :|:|
 Frog   134 -------TERDLREVFSKYGPISDVSIVYDQQSRRSRGFSFVYFENVDDA-KEAKERANGMELDG 190

  Fly   190 KMVDVKKALPKQNDQQGGGGGRGGPGGRAGGNRGNMGGGNYGNQNGGGNWNNGGNNWGNNRGGND 254
            :.:.|..::.|:......|...|.|              .||:......::.     |.:|||.|
 Frog   191 RRIRVDFSITKRPHTPTPGIYMGRP--------------TYGSSRRRDYYDR-----GYDRGGYD 236

  Fly   255 N--WGNNSFGGGGGGGGGYGGGNN 276
            :  :.:.|:.||||||||:.||.:
 Frog   237 DREYYSRSYRGGGGGGGGWRGGQD 260

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb98DENP_524543.1 RRM1_hnRNPA_like 32..109 CDD:241022 10/44 (23%)
RRM_SF 123..195 CDD:302621 20/73 (27%)
tra2bNP_001006878.1 RRM_SF 113..201 CDD:388407 24/95 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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