DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb98DE and trv

DIOPT Version :9

Sequence 1:NP_524543.1 Gene:Hrb98DE / 43385 FlyBaseID:FBgn0001215 Length:365 Species:Drosophila melanogaster
Sequence 2:NP_001163754.3 Gene:trv / 43362 FlyBaseID:FBgn0085391 Length:651 Species:Drosophila melanogaster


Alignment Length:368 Identity:70/368 - (19%)
Similarity:117/368 - (31%) Gaps:144/368 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 QDSITEPEHMRKL------FIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITY 79
            :||..|.|:|..|      |:|.|......:.|:..|..:|.|.|..|::||:|.:|:|:||:::
  Fly   296 EDSDEEMEYMPPLHKQFHIFVGDLSSEIETQQLREAFTPFGEISDCRVVRDPQTLKSKGYGFVSF 360

  Fly    80 SHSSMIDEA--------QKSRPHKIDGRVVEPKRAVPRQDI----------DSPNAGATVKKLFV 126
            ...|..:.|        ..||..:.:....:|..:  :::|          .|..:..||   :|
  Fly   361 IKKSEAESAITAMNGQWLGSRSIRTNWATRKPPAS--KENIKPLTFDEVYNQSSPSNCTV---YV 420

  Fly   127 GALKD---DHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQH-QL 187
            |.:..   ...|:.::..|..:|.|.:|.:..||      |:|||.|...:.....::...: ::
  Fly   421 GGVNSALTALSEEVLQKTFAPYGAIQEIRVFKDK------GYAFVRFSTKEAATHAIVGVHNTEI 479

  Fly   188 NGKMVDVKKALPKQNDQQGGGGGRGGPGGRAGGNRGNMGGGNYGNQNGGGNWNNGGNNWGNNRGG 252
            |.:.|..                                                  :||...|.
  Fly   480 NAQPVKC--------------------------------------------------SWGKESGD 494

  Fly   253 NDN------WGNNS---------FG-GGGGGGGGYG---GGNNSWGN------------------ 280
            .:|      ...||         :| |.......||   .....|.:                  
  Fly   495 PNNAQTIATQALNSAAAAAAGFPYGVGAAAAAAAYGQQLAATGCWYSPTPTYPASSATAAAVTPA 559

  Fly   281 -------NNPWDNGNGGGNFGGGGNNWNNGGNDFGGYQQNYGG 316
                   .|.:..|..|.:||           .:|||||.|.|
  Fly   560 AASAAAVQNQFLQGIQGYHFG-----------QYGGYQQGYMG 591

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb98DENP_524543.1 RRM1_hnRNPA_like 32..109 CDD:241022 22/90 (24%)
RRM_SF 123..195 CDD:302621 16/75 (21%)
trvNP_001163754.3 RRM2_TIA1_like 313..387 CDD:240799 20/73 (27%)
RRM3_TIA1_like 416..491 CDD:240800 20/133 (15%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

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