DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb98DE and Syp

DIOPT Version :9

Sequence 1:NP_524543.1 Gene:Hrb98DE / 43385 FlyBaseID:FBgn0001215 Length:365 Species:Drosophila melanogaster
Sequence 2:NP_001262777.1 Gene:Syp / 42460 FlyBaseID:FBgn0038826 Length:761 Species:Drosophila melanogaster


Alignment Length:410 Identity:88/410 - (21%)
Similarity:144/410 - (35%) Gaps:111/410 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 KLFIGGLDYRTTDENLKAHFEKWG-NIVDVVVMKDP-RTKRSRGFGFITY-SH--SSMIDEAQKS 91
            :||:|.:......:.|...|.|.. .:.:|::...| ..|::|||.|:.| ||  :|:......:
  Fly   288 RLFVGNIPKNRDRDELIEEFSKHAPGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGT 352

  Fly    92 RPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVID 156
            ...|:.|..:....|.|:::.|.... :.||.|:|..|..|..|..:::.|:.:|.:        
  Fly   353 GRIKVWGCDIIVDWADPQEEPDEQTM-SKVKVLYVRNLTQDVSEDKLKEQFEQYGKV-------- 408

  Fly   157 KETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGK-----MVDVKKALP----KQNDQ-------- 204
            :...|.:.:||:.|:|.|.    .::....||||     .::|..|.|    |:.::        
  Fly   409 ERVKKIKDYAFIHFEDRDS----AVEAMRGLNGKEIGASNIEVSLAKPPSDKKKKEEILRARERR 469

  Fly   205 -----QGGGGGRG-----------------------GPGGRAG----------------GNRGNM 225
                 |...|..|                       .||.|..                |.....
  Fly   470 MMQMMQARPGIVGFETLSPYRNLSPTHPSIMSLTPMRPGARMPLRTPIPREYDYFYDFFGFSDYR 534

  Fly   226 GGGNYGNQ----NGGGNWNNGGNNWGN--NRGGNDNWGNNSFGGGGGGGGGYGGGN----NSWGN 280
            .||::||.    :....|.:|..|:.:  |.||         ||.|||||...||.    ::.|:
  Fly   535 QGGSFGNNVSYYDDMYRWIDGDYNYYDYPNGGG---------GGSGGGGGSVSGGTVLPLSAGGS 590

  Fly   281 -NNPWDNGNGGGNFGGGGNNWNNGGNDFGGYQQNYGGGPQRG-----GGNFNNNRMQPYQGGGGF 339
             |:|..:|.....   |..:..:......|..:.:|....||     .|:.:....|......|.
  Fly   591 QNSPMASGQRSAR---GSASGPSASPSLMGVGRGHGITVPRGRVVGQRGSISRLGAQTVPQAAGA 652

  Fly   340 KAGGGNQ----GNYGGNNQG 355
            .|..|..    ...|...||
  Fly   653 AAAAGQAAAAVAQRGATGQG 672

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb98DENP_524543.1 RRM1_hnRNPA_like 32..109 CDD:241022 20/81 (25%)
RRM_SF 123..195 CDD:302621 17/76 (22%)
SypNP_001262777.1 RRM1_hnRNPR_like 205..283 CDD:240695
RRM2_hnRNPR_like 286..367 CDD:240696 19/78 (24%)
RRM3_hnRNPR_like 381..452 CDD:240697 21/82 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45463961
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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