Protein Alignment Hrb98DE and pabpn1

DIOPT Version :10

• Sequence 1: NP_524543.1
• Gene: Hrb98DE / 43385
• FlyBaseID: FBgn0001215
• Length: 365
• Species: Drosophila melanogaster
• Sequence 2: NP_001001230.1
• Gene: pabpn1 / 407911
• XenbaseID: XB-GENE-1007049
• Length: 296
• Species: Xenopus tropicalis
• Alignment Length: 197
• Identity: 49/197 - (24%)
• Similarity: 84/197 - (42%)
• Gaps: 36/197 - (18%)

  Fly    36 GGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKSRPHKIDGRV 100
            |||: ...||.|:.  |:.|.:.....::||..:.      |......|.:||:|.:
 Frog    81 GGLE-ELEDEELEE--EEPGELTGDQTIEDPELEA------IKARVREMEEEAEKLK-------- 128

  Fly   101 VEPKRAVPRQDIDSP---NAG-----------ATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDI 151
             |.:..|.:|...||   |||           |..:.::||.:......:.:..:|...|::..:
 Frog   129 -ELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRV 192

  Fly   152 NIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDVKKALPKQNDQQG-GGGGRGGPG 215
            .|:.||.||..:|||::||.|.:.|...:...:....|:.:   |.:||:.::.| ....||.|.
 Frog   193 TILCDKYTGHPKGFAYIEFSDKESVRTSLALDESLFRGRQI---KVVPKRTNRPGISTTDRGFPR 254

  Fly   216 GR 217
            .|
 Frog   255 AR 256

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Hrb98DE	NP_524543.1	RRM1_hnRNPA_like	32..109	CDD:409992	17/72 (24%)
		RRM_SF	123..195	CDD:473069	17/71 (24%)
pabpn1	NP_001001230.1	Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	1..102		8/23 (35%)
		Necessary for homooligomerization. /evidence=ECO:0000250|UniProtKB:Q86U42	146..296		29/114 (25%)
		RRM_II_PABPN1	164..239	CDD:409966	19/77 (25%)