DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb98DE and hnrnpa0

DIOPT Version :9

Sequence 1:NP_524543.1 Gene:Hrb98DE / 43385 FlyBaseID:FBgn0001215 Length:365 Species:Drosophila melanogaster
Sequence 2:NP_988923.1 Gene:hnrnpa0 / 394519 XenbaseID:XB-GENE-1000573 Length:309 Species:Xenopus tropicalis


Alignment Length:345 Identity:146/345 - (42%)
Similarity:193/345 - (55%) Gaps:64/345 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 KLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKSRPHKI 96
            |||||||:.:||:|.|:.|||.:|.:.|.||:.:|:|||||.|||:|||.::..|.|.::.||.:
 Frog    13 KLFIGGLNVQTTEEGLRQHFETYGQLTDCVVVINPQTKRSRCFGFVTYSSAAEADAAVEASPHVV 77

  Fly    97 DGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGK 161
            ||..||.||||.|:|...|.|.|.|||||||.||:|..|..:.::|..||.:..:.|:.||.:||
 Frog    78 DGNNVELKRAVSREDSAKPGAHAKVKKLFVGGLKEDVGESDLLEHFAQFGAVEKVEIIADKVSGK 142

  Fly   162 KRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDVKKALPKQNDQQGGG----GGRGGPGGRAGGNR 222
            ||||.||.|.::|..||..:.|.|.:||..|:||||:||:...||..    |||||        |
 Frog   143 KRGFGFVYFTNHDSADKAAVVKFHSINGHRVEVKKAVPKEELSQGSNRSFRGGRGG--------R 199

  Fly   223 GNMGGG---NYGNQNGGGNWNNGGNNWGNNRGGNDNWGNNSFGGGGGGGGGYGGGNNSWGNNNPW 284
            |..|||   :|....|.|                   |..:|   |||.|||||||         
 Frog   200 GRGGGGAPRDYNGIPGSG-------------------GKAAF---GGGYGGYGGGN--------- 233

  Fly   285 DNGNGGGNFGGG---GNNWNNGGNDFGGYQQNYGG-GPQRGGGNFNNNRMQ---PYQGGGGFKAG 342
               .|.|::|||   .:::.||.|.||.|.|:... ||.:|.|:.:.||..   ||:  ||:..|
 Frog   234 ---QGYGSYGGGYGEQSDYGNGYNSFGSYSQHQSSYGPMKGAGSGSWNRPNTSGPYR--GGYSGG 293

  Fly   343 GGNQGNYG-GNNQGFNNGGN 361
            ||  |.|| |::.|   ||:
 Frog   294 GG--GGYGVGSSYG---GGS 308

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb98DENP_524543.1 RRM1_hnRNPA_like 32..109 CDD:241022 42/76 (55%)
RRM_SF 123..195 CDD:302621 32/71 (45%)
hnrnpa0NP_988923.1 RRM1_hnRNPA0 10..88 CDD:240772 40/74 (54%)
RRM2_hnRNPA0 104..183 CDD:241023 38/78 (49%)
HnRNPA1 255..>275 CDD:314495 8/19 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1202220at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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