DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb98DE and hnrnpa1a

DIOPT Version :10

Sequence 1:NP_524543.1 Gene:Hrb98DE / 43385 FlyBaseID:FBgn0001215 Length:365 Species:Drosophila melanogaster
Sequence 2:NP_001428354.1 Gene:hnrnpa1a / 393467 ZFINID:ZDB-GENE-040426-1546 Length:417 Species:Danio rerio


Alignment Length:400 Identity:189/400 - (47%)
Similarity:234/400 - (58%) Gaps:65/400 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 QDSITEPEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMI 85
            |.:..|||.:||||||||.:.||||:|:||||:||.:.|.|||:||.|||||||||:|||....:
Zfish    28 QQTPREPEQLRKLFIGGLSFETTDESLRAHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSSVGEV 92

  Fly    86 DEAQKSRPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVD 150
            |.|..:||||:|||.|||||||.|:|...|.|.:||||:|||.:|:|.||:.:|:||..||.|.:
Zfish    93 DAAMDARPHKVDGRAVEPKRAVSREDSSKPGAHSTVKKMFVGGIKEDTDEEHLREYFGQFGKIDE 157

  Fly   151 INIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDVKKALPKQ-------------- 201
            :||:.:|.:.|:|||||:.|||:|.||::|:||.|.:||...:|:|||.::              
Zfish   158 VNIMTEKNSDKRRGFAFITFDDHDAVDRIVIQKYHTVNGHNCEVRKALSREEMNRVSMNSRGGRG 222

  Fly   202 --------NDQQGGGGGRGGPGGRAGGNRGNMGGGNYG-----NQNGGGN--------WNNGGNN 245
                    |..:|||||.||.||..||..|..|||.||     |..||||        :..||.|
Zfish   223 GGGGSGGGNFGRGGGGGGGGYGGGYGGGGGRGGGGGYGGGDGYNGYGGGNGISTDKSGYGGGGPN 287

  Fly   246 WGNNRGGNDNWGNNSFGGGGGG----GGGYGGGNNSWGNNNPWDNGNGGGNFGGGGNNWNNGG-- 304
            :|.|||    :|:...||||||    |||||||......||....|.||||||||  |:..||  
Zfish   288 YGGNRG----YGSGGGGGGGGGYGNQGGGYGGGGGYDNYNNNGGGGGGGGNFGGG--NFGGGGDY 346

  Fly   305 NDFGGYQQ------------NYGGGPQRGGGNFNNNRMQPYQG--GGGFKAGGGNQGNYGGNNQG 355
            ||||.|..            ||||    |||....:...||.|  |||...|||..|..||...|
Zfish   347 NDFGNYNNQSSSNYGPMKGGNYGG----GGGGGGRSGGGPYGGGYGGGSGGGGGYGGGSGGGGGG 407

  Fly   356 FNNGGNNRRY 365
            :..|...||:
Zfish   408 YGGGSGGRRF 417

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb98DENP_524543.1 RRM1_hnRNPA_like 32..109 CDD:409992 52/76 (68%)
RRM_SF 123..195 CDD:473069 35/71 (49%)
hnrnpa1aNP_001428354.1 None

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