DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb98DE and Hnrnpa3

DIOPT Version :9

Sequence 1:NP_524543.1 Gene:Hrb98DE / 43385 FlyBaseID:FBgn0001215 Length:365 Species:Drosophila melanogaster
Sequence 2:NP_001104764.1 Gene:Hnrnpa3 / 362152 RGDID:727807 Length:379 Species:Rattus norvegicus


Alignment Length:380 Identity:188/380 - (49%)
Similarity:235/380 - (61%) Gaps:50/380 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 NSNQNQNGNSNGHDDDFPQDSITEPEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPR 67
            :..:.:.....|||   |:    |||.:||||||||.:.|||::|:.||||||.:.|.|||:||:
  Rat    14 SGRRRRRRGEEGHD---PK----EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQ 71

  Fly    68 TKRSRGFGFITYSHSSMIDEAQKSRPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDD 132
            |||||||||:|||....:|.|..:||||:|||||||||||.|:|...|.|..||||:|||.:|:|
  Rat    72 TKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKED 136

  Fly   133 HDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDVKKA 197
            .:|.::||||:.:|.|..|.::.|:::|||||||||.|||:|.|||:|:||.|.:||...:||||
  Rat   137 TEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201

  Fly   198 LPKQ-----NDQQGGGGGRG---GPGGRAGGNRGNMG-GGNYGNQNGGGNWNNGGNNWGNNRGGN 253
            |.||     ..|:|.|||.|   |.||..||..||.| |||:|   |.|.:..||.....:.||.
  Rat   202 LSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFG---GRGGYGGGGGGSRGSYGGG 263

  Fly   254 DNWGNNSFGGGG---GGG------GGYGGGNNSWGN--------NNPWDNGNGGGNFGGGGNNWN 301
            |. |.|.|||.|   |||      ||||||...:||        ...:|..|.|||||||  |:.
  Rat   264 DG-GYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGGYDGYNEGGNFGGG--NYG 325

  Fly   302 NGG--NDFGGY----QQNYGGGPQRGGGNFNNNRMQPYQGGGGFKAGGGNQGNYG 350
            .||  ||||.|    |.||  ||.:||.....:...||  |||:.:|||: |.||
  Rat   326 GGGNYNDFGNYSGQQQSNY--GPMKGGSFGGRSSGSPY--GGGYGSGGGS-GGYG 375

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb98DENP_524543.1 RRM1_hnRNPA_like 32..109 CDD:241022 52/76 (68%)
RRM_SF 123..195 CDD:302621 37/71 (52%)
Hnrnpa3NP_001104764.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..35 7/27 (26%)
RRM1_hnRNPA_like 36..113 CDD:409992 52/76 (68%)
RRM2_hnRNPA3 126..205 CDD:409996 43/78 (55%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 204..225 8/20 (40%)
HnRNPA1 332..>348 CDD:402981 9/17 (53%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 335..379 19/46 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 102 1.000 Domainoid score I6662
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 348 1.000 Inparanoid score I2227
OMA 1 1.010 - - QHG46466
OrthoDB 1 1.010 - - D1202220at2759
OrthoFinder 1 1.000 - - FOG0000779
OrthoInspector 1 1.000 - - mtm8985
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X431
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
109.980

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