DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb98DE and Hrb27C

DIOPT Version :9

Sequence 1:NP_524543.1 Gene:Hrb98DE / 43385 FlyBaseID:FBgn0001215 Length:365 Species:Drosophila melanogaster
Sequence 2:NP_001162897.1 Gene:Hrb27C / 33968 FlyBaseID:FBgn0004838 Length:421 Species:Drosophila melanogaster


Alignment Length:398 Identity:121/398 - (30%)
Similarity:179/398 - (44%) Gaps:73/398 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 EPEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQK 90
            |.:...|||:|||.:.||.|||..:|.::|:|:|.||||:..:.|||||||:|::..:.::...:
  Fly     2 EEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQ 66

  Fly    91 SRPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVI 155
            :.||.:|||.::||...|| .:..|..|... |:|:|.|..:..|..:|.:|..:|.:.::.|:.
  Fly    67 NGPHTLDGRTIDPKPCNPR-TLQKPKKGGGY-KVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMY 129

  Fly   156 DKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDVKKALPKQNDQQGGGGGRGGPGGRAGG 220
            |:|..|.|||.|:.|::...|:.|..::...||||.|::|||.|:.     |.||:.......||
  Fly   130 DQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEPRD-----GSGGQNSNNSTVGG 189

  Fly   221 NRGNMGG--GNYG------NQNGGGNWNNGGNNWG------NNRGGNDNWGNN----SFGGGGGG 267
            ..|.:|.  .::|      |...|.|...||....      |...|...||.:    .:|.|..|
  Fly   190 AYGKLGNECSHWGPHHAPINMMQGQNGQMGGPPLNMPIGAPNMMPGYQGWGTSPQQQQYGYGNSG 254

  Fly   268 GGGYGGGNNSWGNNNP---WDN--------GNGG-------------GNFGGGG-NNWNNGGNDF 307
            .|.|.|.....|...|   |.|        |.||             |..|||. |:||...|..
  Fly   255 PGSYQGWGAPPGPQGPPPQWSNYAGPQQTQGYGGYDMYNSTSTGAPSGPSGGGSWNSWNMPPNSA 319

  Fly   308 GGYQQNYGGGPQRGGGNFNN--NRMQPYQGGGGFKAG----------------GGNQGNYGGNNQ 354
            |.     .|.|..|.|...:  :|.|.:..||....|                .|::.:|||...
  Fly   320 GP-----TGAPGAGAGTATDMYSRAQAWATGGPSTTGPVGGMPRTGPGNSASKSGSEYDYGGYGS 379

  Fly   355 GFNNGGNN 362
            |::...:|
  Fly   380 GYDYDYSN 387

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb98DENP_524543.1 RRM1_hnRNPA_like 32..109 CDD:241022 34/76 (45%)
RRM_SF 123..195 CDD:302621 24/71 (34%)
Hrb27CNP_001162897.1 RRM1_DAZAP1 8..89 CDD:241018 36/81 (44%)
RRM2_DAZAP1 94..173 CDD:240773 27/79 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45463975
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR48027
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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