DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hrb98DE and hnrnpa0l

DIOPT Version :9

Sequence 1:NP_524543.1 Gene:Hrb98DE / 43385 FlyBaseID:FBgn0001215 Length:365 Species:Drosophila melanogaster
Sequence 2:NP_001268650.1 Gene:hnrnpa0l / 321899 ZFINID:ZDB-GENE-030131-618 Length:302 Species:Danio rerio


Alignment Length:333 Identity:153/333 - (45%)
Similarity:194/333 - (58%) Gaps:51/333 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 KLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKSRPHKI 96
            |||:|||:.:||||.|:||||::|.:.|.||:.:...:|||.|||:|||.:...|.|..:|||.:
Zfish     7 KLFVGGLNVQTTDEGLRAHFEQYGQLTDCVVVMNQPLQRSRCFGFVTYSSTEEADAAMSARPHIV 71

  Fly    97 DGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGK 161
            ||..|:.||||.|:|...|...|.|||:|||.||||.:::.::|||..||.|....::.||:|||
Zfish    72 DGNNVDLKRAVAREDAGKPEMLAKVKKIFVGGLKDDIEDEHLQDYFSQFGPIEKAQVITDKDTGK 136

  Fly   162 KRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDVKKALPKQNDQQGGGGGRGGPGGRAGGNRGNMG 226
            ||||.||.|||.|..||.|:.|.|.:.|..|:|||||.|| :.|..||||||.|||         
Zfish   137 KRGFGFVYFDDNDSADKAVVMKFHSICGHKVEVKKALTKQ-EMQSTGGGRGGRGGR--------- 191

  Fly   227 GGNYGNQNGGGNWNNGGNNWGNNRGGNDNWGNNSFGGGGGGG--GGYGGGNNSWGNNNPWD--NG 287
                                |..||       :.|||||.||  ..||..||.:|||:.:|  ||
Zfish   192 --------------------GMGRG-------SGFGGGGRGGYYNDYGYQNNGFGNNSGYDSQNG 229

  Fly   288 NGGG---NFGGGGNNWNNGGNDFG-GY-QQNYGGGPQRGG-GNFNNNRMQ--PY-QGGGGFKAGG 343
            .|||   ..|||..| .||.:||| || ||..|.|..:.| ||:::.|..  || :||||..:||
Zfish   230 YGGGYSDQMGGGYGN-GNGYSDFGEGYGQQASGYGAMKTGYGNYSSGRQSSGPYPRGGGGGGSGG 293

  Fly   344 GNQGNYGG 351
            ..:|.|||
Zfish   294 YGRGGYGG 301

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb98DENP_524543.1 RRM1_hnRNPA_like 32..109 CDD:241022 40/76 (53%)
RRM_SF 123..195 CDD:302621 36/71 (51%)
hnrnpa0lNP_001268650.1 RRM1_hnRNPA0 4..82 CDD:240772 38/74 (51%)
RRM_SF 98..177 CDD:302621 43/79 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 81 1.000 Domainoid score I8421
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG46466
OrthoDB 1 1.010 - - D1202220at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm6517
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
65.890

Return to query results.
Submit another query.