DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb98DE and Rbm31y

DIOPT Version :9

Sequence 1:NP_524543.1 Gene:Hrb98DE / 43385 FlyBaseID:FBgn0001215 Length:365 Species:Drosophila melanogaster
Sequence 2:XP_229073.1 Gene:Rbm31y / 302780 RGDID:1562219 Length:565 Species:Rattus norvegicus


Alignment Length:477 Identity:112/477 - (23%)
Similarity:166/477 - (34%) Gaps:140/477 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 DDFPQDSITEPEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSH 81
            :.|..|:....:...|:|||||......:.|..:..|:|.|:|.::..||.|..||||||:.:..
  Rat    19 EGFRIDATKNQQDASKMFIGGLSQELNKQVLLEYLSKFGEIIDFIIKIDPNTGLSRGFGFVLFKD 83

  Fly    82 SSMIDEAQKSRPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFG 146
            ||.:::..:.:.||:||:.:|.|||   :.::|.   ..:||:|||.|.....|:.||.||..||
  Rat    84 SSTVEKVLRVKDHKVDGKKIEFKRA---KALESQ---FPIKKVFVGGLNPRMSEEKIRAYFGTFG 142

  Fly   147 NIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDVKKALPKQND--QQGGGG 209
            .|..|.:.:..:|.::|.|.|:::.|.:||.||:..:.|.:.....:||.|.||:..  |.....
  Rat   143 QIEAIELPLCSDTQERRAFGFIKYMDENPVRKVLETRYHFIGSSRCEVKMAFPKEYPARQLSKSK 207

  Fly   210 GRGGPGGRAGGNRGNM-----GGGNY------------GNQNG--GGNWNNGGNN---WGNNRGG 252
            .|.....|.......:     |||:.            .||:.  .|::.:..|:   ..|.||.
  Rat   208 TRAKDRARTAVPAAELENHWRGGGSQNFHIMDNSDTQEANQDAHRAGSYTSRANSDVTLSNARGF 272

  Fly   253 NDNWGNNSFGGGGG-----------------------GGGGYG-GGN------------------ 275
            .|.  .|:|.....                       |...|. |.|                  
  Rat   273 RDT--PNAFQANPNVIVTNSSAFRASRTALRPISNTVGLSHYALGANPNAFLANQYTFGAIPNAL 335

  Fly   276 -------------------------NSWGNN------NP---WDN----GNGGGNFGGGGNNWNN 302
                                     |::|.|      ||   |.|    |.....||.|...||.
  Rat   336 RTSQYTLGTYPNALGVSQYALAAYPNAFGINQCTLGANPNVFWTNQYPLGTYPDAFGIGQYAWNM 400

  Fly   303 GGNDFGGYQQNYGGGPQRGGGNFNNNRMQPYQ----------------------------GGGGF 339
            ..|.||..|...|........|..:....||.                            .|...
  Rat   401 SPNVFGANQYTLGTNSDAFRPNCYSFVANPYDIRTNHYVLATNPNVSRTSQYILGANPNAFGSSH 465

  Fly   340 KAGGGNQGNYGGNNQGFNNGGN 361
            .:.|.:|..:|.|...|...||
  Rat   466 YSVGASQNVFGPNQHSFGVNGN 487

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb98DENP_524543.1 RRM1_hnRNPA_like 32..109 CDD:241022 30/76 (39%)
RRM_SF 123..195 CDD:302621 24/71 (34%)
Rbm31yXP_229073.1 RRM 12..291 CDD:223796 79/279 (28%)
RRM_SF 35..108 CDD:302621 27/72 (38%)
RRM_SF 119..193 CDD:302621 26/73 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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