DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb98DE and SPBC660.15

DIOPT Version :9

Sequence 1:NP_524543.1 Gene:Hrb98DE / 43385 FlyBaseID:FBgn0001215 Length:365 Species:Drosophila melanogaster
Sequence 2:NP_595094.1 Gene:SPBC660.15 / 2541150 PomBaseID:SPBC660.15 Length:474 Species:Schizosaccharomyces pombe


Alignment Length:358 Identity:105/358 - (29%)
Similarity:169/358 - (47%) Gaps:62/358 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 NSNQNQ-----NGNSNGHDDDFPQDSITEPEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVV 62
            |.|:||     :|....::|:..:.|....|. .|:|||||::.|||::|:.:||::|.::|..|
pombe   131 NYNENQSALTGSGAMESNEDNAEETSPFNRED-GKMFIGGLNWETTDDSLRDYFEQFGEVLDCTV 194

  Fly    63 MKDPRTKRSRGFGFITYSHSSMIDEAQKSRPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKLFVG 127
            |:|..|.|||||||:|:.:...::|.. |:.|.:||::::||||:||::.:.      ..|:|||
pombe   195 MRDSTTGRSRGFGFLTFKNPKCVNEVM-SKEHHLDGKIIDPKRAIPREEQEK------TAKMFVG 252

  Fly   128 ALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMV 192
            .:..|..|:..|::|..||.::|..:::||:||:.|||.||.:::...|:..:.|....::||.|
pombe   253 GVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPV 317

  Fly   193 DVKKALPKQNDQQGGGGGRGGPGGRAG---GNRGNMGGG-------NYGNQ-------------- 233
            :||:|.||.:.:......:.|..|.|.   ....||.||       .|..|              
pombe   318 EVKRATPKASLRDSHDRHQHGYHGNANPYYAQNMNMYGGMTPAMMAQYYRQMQQYMEAMRNMPAA 382

  Fly   234 ------------NGGGNWNNGGNNWG-------NNRGGNDNWGNNSFGGGGGGGGGYGGGNNSWG 279
                        .|..:|........       .|:|..|....:.....|...|||.|.|....
pombe   383 AGAVPYPQPVMPAGMADWQQQQQQGAAYFDPSKMNQGTGDGVPFSPSMPSGSSRGGYHGRNPGGP 447

  Fly   280 NNNPWDNGNGGGNFGGGGNNWNNGGNDFGGYQQ 312
            |...:    .|...|.|||  ..||:.|..|::
pombe   448 NRQRY----RGRRDGRGGN--TGGGHSFHPYRR 474

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb98DENP_524543.1 RRM1_hnRNPA_like 32..109 CDD:241022 35/76 (46%)
RRM_SF 123..195 CDD:302621 25/71 (35%)
SPBC660.15NP_595094.1 RRM1_Hrp1p 165..240 CDD:241021 34/75 (45%)
RRM2_Hrp1p 248..322 CDD:240776 27/73 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR48027
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.010

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