DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb98DE and Rbm3

DIOPT Version :10

Sequence 1:NP_524543.1 Gene:Hrb98DE / 43385 FlyBaseID:FBgn0001215 Length:365 Species:Drosophila melanogaster
Sequence 2:NP_058089.2 Gene:Rbm3 / 19652 MGIID:1099460 Length:154 Species:Mus musculus


Alignment Length:157 Identity:52/157 - (33%)
Similarity:77/157 - (49%) Gaps:20/157 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   123 KLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPV-DKVVLQKQHQ 186
            |||||.|..:.|||::.|:|..||.|.::.:|.|:||.:.|||.|:.|.:.:.. |.:.......
Mouse     7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGES 71

  Fly   187 LNGKMVDVKKALPKQNDQQGGG-GGRGGPGGRAGGNRGNMGGGNYGNQNGGGNWNNGGNN--WGN 248
            |:|:.:.|..|.......:||. ||||....|.||::| .|.|.|.::.||..:..|.:.  .|.
Mouse    72 LDGRQIRVDHAGKSARGSRGGAFGGRGRSYSRGGGDQG-YGSGRYDSRPGGYGYGYGRSRDYSGR 135

  Fly   249 NRGGNDNWGNNSFGGGGGGGGGYGGGN 275
            ::||.|.               |.|||
Mouse   136 SQGGYDR---------------YSGGN 147

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb98DENP_524543.1 RRM1_hnRNPA_like 32..109 CDD:409992
RRM_SF 123..195 CDD:473069 26/72 (36%)
Rbm3NP_058089.2 RRM_CIRBP_RBM3 6..85 CDD:409883 28/77 (36%)
Blue background indicates that the domain is not in the aligned region.

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