DRSC/TRiP Functional Genomics Resources

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Protein Alignment fkh and Foxc1

DIOPT Version :9

Sequence 1:NP_001263038.1 Gene:fkh / 43383 FlyBaseID:FBgn0000659 Length:692 Species:Drosophila melanogaster
Sequence 2:NP_599165.1 Gene:Foxc1 / 364706 RGDID:1589718 Length:553 Species:Rattus norvegicus


Alignment Length:591 Identity:176/591 - (29%)
Similarity:237/591 - (40%) Gaps:161/591 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   145 SMGSP--LG---NMGGCMAMSAASMSAAGLSGTYGAMP--------PGSREMETGSPNSLGRSRV 196
            |:.||  ||   .:||..:...|:.:|||  |.|.|||        |...|...|     |.:|.
  Rat     6 SVSSPNSLGVVPYLGGEQSYYRAAAAAAG--GGYTAMPAPMSVYSHPAHAEQYPG-----GMARA 63

  Fly   197 DKP-TTYRRSYTHAKPPYSYISLITMAIQNNPTRMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRH 260
            ..| |...:.....|||||||:||||||||.|.:.:||:.|||||||.|||||.|:|.|||||||
  Rat    64 YGPYTPQPQPKDMVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMDRFPFYRDNKQGWQNSIRH 128

  Fly   261 SLSFNDCFVKIPRTPDKPGKGSFWTLHPDSGNMFENGCYLRRQKRFKDEKKEAIRQLHKSPSHSS 325
            :||.|:||||:||...||||||:|||.|||.||||||.:|||::|||  ||:|:           
  Rat   129 NLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSFLRRRRRFK--KKDAV----------- 180

  Fly   326 LEATSPGKKDHEDSHHMHHHHHSRLDHHQHHKEAGGASIAGVNVLSAAHSKDAEALAMLHANAEL 390
                    ||.|:...:|.       ......:||...       :.|..:.||..|.       
  Rat   181 --------KDKEEKGRLHL-------QEPPPPQAGRQP-------APAPPEQAEGSAP------- 216

  Fly   391 CLSQQP----QHVPTHHHHQHHQLQQEELSAMMANRCHPSL----ITDYHSSMHPLKQEPSGYTP 447
             ..|||    |.:.|.:.......|....:|.:.:....::    ..|..||.......|.|..|
  Rat   217 -GPQQPPVRIQDIKTENGTCPSPPQPLSPAAALGSGSAATVPKIESPDSSSSSLSSGSSPPGSLP 280

  Fly   448 SSHPFSINRLLPTESKADIKMYDMSQYAGYNALSPLTN-------SHAALGQDSYYQSLGYHAPA 505
            |:.|.|::...|............||  |::..:.:|:       |.|.||.       |..|.|
  Rat   281 SARPLSLDAAEPAPPPQPAPPPHHSQ--GFSVDNIMTSLRGSPQGSAAELGS-------GLLASA 336

  Fly   506 GTTSLXHHQYPLAXGRAEQMLRSQQQQHLQQQHQQHQQQQQQHQLHQQQQQMQQSAQQLTSASNT 570
            ..:|. ....||| |       :....|                            ..|.|:..:
  Rat   337 AASSRAGIAPPLALG-------AYSPGH----------------------------SSLYSSPCS 366

  Fly   571 PATSAKASGKAGSASASGSGSGSGSGSG--SNYSQKLQQQHQQQQQQQAAAQQQHHQQ------- 626
            .::||.:||..|.....|.||.|.:|:|  :.|...|     |.....||.::..|.|       
  Rat   367 QSSSAGSSGGGGGGGGGGGGSSSAAGTGGAATYHCNL-----QAMSLYAAGERGGHLQGPAGGGG 426

  Fly   627 ---------QQQLLQELQEDSSNITSDLSEEQLQQHQAAQQ-QLYNNYQQY-------------- 667
                     ...|.......||:::.....::...|.|:.| :|.:.|...              
  Rat   427 SAAVDDPLPDYSLPPATSSSSSSLSHGGGGQETSHHPASHQGRLTSWYLNQAGGDLGHLASAAAA 491

  Fly   668 AAAAGY 673
            ||||||
  Rat   492 AAAAGY 497

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fkhNP_001263038.1 Forkhead_N <120..209 CDD:254796 23/77 (30%)
FH 210..298 CDD:214627 65/87 (75%)
Foxc1NP_599165.1 FH 78..166 CDD:214627 65/87 (75%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000010
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.910

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