Protein Alignment trv and UBP1A

DIOPT Version :10

• Sequence 1: NP_001163754.3
• Gene: trv / 43362
• FlyBaseID: FBgn0085391
• Length: 651
• Species: Drosophila melanogaster
• Sequence 2: NP_849806.1
• Gene: UBP1A / 841846
• AraportID: AT1G54080
• Length: 430
• Species: Arabidopsis thaliana
• Alignment Length: 510
• Identity: 143/510 - (28%)
• Similarity: 205/510 - (40%)
• Gaps: 169/510 - (33%)

  Fly   145 QQQHPQQQQHDLHM-------QHPLTPSEDCKPLLHAKSVPPPPQPPPMLTHFQAMMQPPPLPPS 202
            |||..|||||...|       ||         |.|:...|..|||..|:              ||
plant     9 QQQQQQQQQHQQAMIQQAMMQQH---------PSLYHPGVMAPPQMEPL--------------PS 50

  Fly   203 PMMPPQSFGCPLPSRT-------------------PATPPLPGTYRVQSLKSA---------AAA 239
            ..:|| .|. |...|:                   .:|.|:.....::..||:         ..|
plant    51 GNLPP-GFD-PTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSSYGFVHYFDRRCA 113

  Fly   240 AVSAYQRNGKLPRNLPALRAMEMALRTN-SFATPPAPHSLPLPPPHAARTEGGGQDMEDSDEEME 303
            :::....||:        ......::.| ::||                    || .||:.
plant   114 SMAIMTLNGR--------HIFGQPMKVNWAYAT--------------------GQ-REDTS---- 145

  Fly   304 YMPPLHKQFHIFVGDLSSEIETQQLREAFTPFGEIS----DCRVVRDPQTLKSKGYGFVSFIKKS 364
                  ..|:|||||||.|:....|.::|:.|...|    |.||:.|.:|.:|:|:|||||..:.
plant   146 ------SHFNIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQ 204

  Fly   365 EAESAITAMNGQWLGSRSIRTNWATR-------KPPASKENIKPLTFD------EVYNQSSPSN- 415
            :|::||..|||:|:.||.||.||||:       |..:..:::..||..      |:.|:.:|.|
plant   205 DAQTAINEMNGKWVSSRQIRCNWATKGATFGEDKHSSDGKSVVELTNGSSEDGRELSNEDAPENN 269

  Fly   416 ---CTVYVGGVNSALTALSEEVLQKTFAPYGA--IQEIRVFKDKGYAFVRFSTKEAATHAI-VGV 474
               .|||||.::..:|.|.   |.:.|...||  |:|:||.:|||:.|||::|.:.|..|| :|
plant   270 PQFTTVYVGNLSPEVTQLD---LHRLFYTLGAGVIEEVRVQRDKGFGFVRYNTHDEAALAIQMG- 330

  Fly   475 HNTEINAQP------VKCSWGKESGDPNNAQTIATQALNSAAAAAAGFPYGVGAAAA--AAAYGQ 531
                 ||||      ::||||       |..|.:..|.|.....|   |..|.:.:|  ..||.:
plant   331 -----NAQPFLFSRQIRCSWG-------NKPTPSGTASNPLPPPA---PASVPSLSAMDLLAYER 380

  Fly   532 QLAATGCWYSPTPTYPASSATAAAVTPAAASAAAVQNQFLQGIQGYHFGQYGGYQ 586
            |||..    ...|....|...|......|...||:.:              ||||
plant   381 QLALA----KMHPQAQHSLRQAGLGVNVAGGTAAMYD--------------GGYQ 417

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
trv	NP_001163754.3	RRM2_TIA1_like	313..387	CDD:409789	35/77 (45%)
		RRM3_TIA1_like	416..489	CDD:409790	32/81 (40%)
UBP1A	NP_849806.1	RRM1_PUB1	65..135	CDD:410026	8/77 (10%)
		RRM2_PUB1	147..230	CDD:410031	39/82 (48%)
		RRM_SF	273..349	CDD:473069	35/91 (38%)