DRSC/TRiP Functional Genomics Resources

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Protein Alignment trv and Cstf2t

DIOPT Version :10

Sequence 1:NP_001163754.3 Gene:trv / 43362 FlyBaseID:FBgn0085391 Length:651 Species:Drosophila melanogaster
Sequence 2:NP_112539.2 Gene:Cstf2t / 83410 MGIID:1932622 Length:632 Species:Mus musculus


Alignment Length:369 Identity:85/369 - (23%)
Similarity:123/369 - (33%) Gaps:97/369 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   314 IFVGDLSSEIETQQLREAFTPFGEISDCRVVRDPQTLKSKGYGFVSFIKKSEAESAITAMNGQWL 378
            :|||::..|...:||::.|:..|.:...|:|.|.:|.|.|||||..:..:..|.||:..:||:..
Mouse    18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREF 82

  Fly   379 GSRSIRT-NWATRKPPASKENIKPL-----TFDEVYN-----QSSPSNCTVYVGG---------- 422
            ..|::|. |.|:.|   :||.:|.|     ..|..|.     :.:|.:.|..|..          
Mouse    83 SGRALRVDNAASEK---NKEELKSLGPAAPIIDSPYGDPIDPEDAPESITRAVASLPPEQMFELM 144

  Fly   423 ------VNSALTALSEEVLQKTFAPYGAIQEIRVFK--DKGYAFVRFSTKEAATHAIVGVHNTEI 479
                  |.::.......:||.....|..:|...|.:  |...|......|...|..|.|      
Mouse   145 KQMKLCVQNSHQEARNMLLQNPQLAYALLQAQVVMRIMDPEIALKILHRKIHVTPLIPG------ 203

  Fly   480 NAQPVKCSWGKESGDPNNAQTIATQALNSAAAAAAGFPYGVGAAAAAAAYGQQLAATGCWYSPTP 544
            .:|||.   |...|.|.                    |.|.|......|.|         ..|.|
Mouse   204 KSQPVS---GPGPGGPG--------------------PSGPGGPGPGPAPG---------LCPGP 236

  Fly   545 TYPASSATAAAVTPAAASAAAVQN--QFLQ-GIQGYHFGQYGGYQQGYMGMGVQIPATWQGVTQA 606
            ....:.....|..|.......|::  ..:| .|||           |....| .|||...|....
Mouse   237 NVMLNQQNPPAPQPQHLPRRPVKDIPPLMQTSIQG-----------GIPAPG-PIPAAVPGPGPG 289

  Fly   607 QISPAQQLATGVAGTAIPQAAGVVAYPIQ----QFQVSPQVYPL 646
            .::|        .|...||....|..|:.    |.|:|....|:
Mouse   290 SLTP--------GGAMQPQVGMPVVGPVPLERGQMQISDPRPPM 325

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trvNP_001163754.3 RRM2_TIA1_like 313..387 CDD:409789 25/73 (34%)
RRM3_TIA1_like 416..489 CDD:409790 17/90 (19%)
Cstf2tNP_112539.2 RRM_CSTF2_CSTF2T 10..94 CDD:410072 26/75 (35%)
CSTF2_hinge 112..191 CDD:433869 13/78 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 201..296 29/152 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 365..433
8 X 5 AA tandem repeats of M-E-T-R-[AG] 428..466
12 X 5 AA tandem repeats of G-[AT]-G-[MI]-Q 508..565
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 519..590
CSTF_C 588..628 CDD:464130
Blue background indicates that the domain is not in the aligned region.

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